BAC Information

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BAC

Clone NameMSMg01-524P04
Chromosome12 (Build37)
Map Location 36,004,521 - 36,004,987
singlet/doubletsinglet
Overlap genenone
Upstream geneHdac9, 4921508M14Rik, Prps1l1, Snx13
Downstream geneAhr, LOC100043575, LOC629758, LOC100043579, LOC669866, Agr3, Agr2, Tspan13, EG432649, Bzw2, Ankmy2, 1700108M19Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-524P04.T7 (MSMg01no524_p04.b1)MSMg01-524P04.TJ (MSMg01no524_p04.g1)
ACCAG594903AG594904
length796773
length of high quality
(start - end)		472 (35 - 506)645 (63 - 707)
definitionCHROMAT_FILE: MSMg01no524_p04.b1 PHD_FILE: MSMg01no524_p04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:59:23 2005CHROMAT_FILE: MSMg01no524_p04.g1 PHD_FILE: MSMg01no524_p04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:59:23 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCCAGTC
GGGCTCTAGAACTCTGGCTCTCTACCTGTTGGAAGATACACTAAGTCAGG
GGATGGAGTGAAAGGTCAGACTGTAGGCAGAAGAAACTTTAGGAGAAAGG
CATGCTGTAAGCTACACCTCTGTGGAGAGTGGGCATCCGTACTTCCTGAT
CAATCCTGACTGTGAGGAGGCTTCTGGGGAGCATGGGAAGCTTCCATGAG
CTCATGGGATGGGCACACAGAAGACTGAGAATGCCAGCTACTGTGTGGGA
GATGGAGTTAATGTGAGGCAATGTTGAGATTTTCCTGTACTTTTATAATT
TAACTTTCTGTGGGAAAAGATGTGTCTGTGTTTGTCATAGAATTGGATTC
TGAAACACACACACACACACACACACACACACACACACACACACACACAC
ACACACACACACACACACTGAGAAAGAGAGTGGGGAAGGAGGGGGAAGAG
GGTTAAGAAGAGGAATGGAGCAATCCTCTCACTCTTGCCTTGCATTGTTT
GAATTCTGTAGCTTAAATATGTTTATTATGATCCTCTGAATTTTCCAAGT
TGACCTCATTAGATCTACTGCACTTTGAGATGGGAGAGGGAAAGGAGGAA
CAAGAGAGAGCTAGGGAAAGTGAGGGAAAAATAGAAAGCTCAAGACAGAT
CTCTGCATTGGAAAGATGGAGGATTTATACCACCACTGCTTGTGACAGCA
GGATTTCCTCTCAGAAGAAACTTAAACCCCTGCAGATTCAGTAGAG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTTTGACTTCTTCCTTTCTTATTTGTATCTCCTTTGTGT
CCATTGCTTGTCTAGTTGCTCCATCCAGAACTTCAAGTATATTAAACAGG
AGGTGAGAGAGTGGACAGCTTTGTCATGTCCTTGGTTTTAGCTTTTTTTC
TCCTTGACTGAAGGCTTTCTGTATTTTGACTTTACTATGTTGAAGTGTGT
TGACTATATCTCTACATCCTCTAGCAATTCTGTGGTGAGATTTGTTAGAT
TTTGTGAACAGCTTTTCCTGCATCTAAGGAGGTGATCATTTGGTTTCTGT
CAATGAATCCATTTATGTGGTAGATTAGATTTACTGATGTATGTATATTA
AGCCATCCCTTCATATATTATTGGATGAAACCAATTTGACCCTGATGAAT
ATTCTTTTTGAGGTGTCCTTGGACATAGTTAACAATGGAGTAGGAAACAA
AATTCACACATAAGAATAAATTACCTTCCTATACACAAATGATGAACACA
CCGAGTAATATATCAGTGGACTAGTACCATTCGCAACAGTCTAAAAAATA
TGTGATAAATCTAGCTAAGGATATAAATGACTTATGCAATGCAAACTTTA
AGGTACTGAAAAAAGAAATCAAATGAAATACCAAACGATTGGAAGACCTC
TCATTCTGAAGGACTGCCAAAATTCATATAATAAAAAGGCCATCATACCA
AAAGCAAATTACATATTCAATAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no524_p04.b1 MSMg01no524_p04.b1 CHROMAT_FILE:
MSMg01no524_p04.b1 PHD_FILE: MSMg01no524_p04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:59:23 2005
         (472 letters)



>mm_chr12_36004317_36005189
          Length = 873

 Score =  880 bits (455), Expect = 0.0
 Identities = 465/469 (99%), Gaps = 3/469 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattc-ccagtcgggctctagaactctggctctctacctgttggaagatacactaagtc 63
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaccagtcgggctctagaactctggctctctacctgttggaagatacactaagtc 264

                                                                       
Query: 64  aggggatggagtgaaaggtcagactgtaggcagaagaaactttaggagaaaggcatgctg 123
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aagggatggagtgaaaggtcagactgtaggcagaagaaactttaggagaaaggcatgctg 324

                                                                       
Query: 124 taagctacacctctgtggagagtgggcatccgtacttcctgatcaatcctgactgtgagg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 taagctacacctctgtggagagtgggcatccgtacttcctgatcaatcctgactgtgagg 384

                                                                       
Query: 184 aggcttctggggagcatgggaagcttccatgagctcatgggatgggcacacagaagactg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aggcttctggggagcatgggaagcttccatgagctcatgggatgggcacacagaagactg 444

                                                                       
Query: 244 agaatgccagctactgtgtgggagatggagttaatgtgaggcaatgttgagattttcctg 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 agaatgccagctactgtgtgggagatggagttaatgtgaggcaatgttgagattttcctg 504

                                                                       
Query: 304 tacttttataatttaactttctgtgggaaaagatgtgtctgtgtttgtcatagaattgga 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tacttttataatttaactttctgtgggaaaagatgtgtctgtgtttgtcatagaattgga 564

                                                                       
Query: 364 ttctgaaacacacacacacacacacacacacacacacacacacacacacacacacacaca 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ttctgaaacacacacacacacacacacacacacacacacacacacacacacacacacaca 624

                                                            
Query: 424 cacacacacactgagaaagagagtggggaaggagggggaagagggttaa 472
           |||||||||  ||||||||||||||||||||||||||||||||||||||
Sbjct: 625 cacacacac--tgagaaagagagtggggaaggagggggaagagggttaa 671


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 76
Number of extensions: 36
Number of successful extensions: 36
Number of sequences better than 10.0: 1
Number of HSP's gapped: 31
Number of HSP's successfully gapped: 1
Length of query: 472
Length of database: 873
Length adjustment: 10
Effective length of query: 462
Effective length of database: 863
Effective search space:   398706
Effective search space used:   398706
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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