Query= MSMg01no525_o13.b1 MSMg01no525_o13.b1 CHROMAT_FILE:
MSMg01no525_o13.b1 PHD_FILE: MSMg01no525_o13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:00:40 2005
(655 letters)
>mm_chr12_63341592_63342646
Length = 1055
Score = 1214 bits (628), Expect = 0.0
Identities = 647/656 (98%), Gaps = 5/656 (0%)
Strand = Plus / Plus
Query: 5 gaattctcattccttactaataacgaatatgttttggagacggttttttttttt-----c 59
|||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |
Sbjct: 200 gaattctcattccttagtaataacgaatatgttttggagacgtttttttttttttttttc 259
Query: 60 tctaacacattctcaacaacaaatagacacaagaacttaaagataagttgttttggttct 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 tctaacacattctcaacaacaaatagacacaagaacttaaagataagttgttttggttct 319
Query: 120 aatctaggtgcccataaatgtttttaatgcacacaaacacatagtgactcacacaaatgt 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 aatctaggtgcccataaatgtttttaatgcacacaaacacatagtgactcacacaaatgt 379
Query: 180 tagtacattttctgaaaatcttcattcaagctgcaatgacacatttagtataacctaata 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tagtacattttctgaaaatcttcattcaagctgcaatgacacatttagtataacctaata 439
Query: 240 ttattaaccacttaaagaaaatattccatgtatgcaatatttacaggagtttaagtaaat 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ttattaaccacttaaagaaaatattccatgtatgcaatatttacaggagtttaagtaaat 499
Query: 300 atgtatgctttgtaatgctgccaaacactttacagcatactgttttatactgtagtattt 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 atgtatgctttgtaatgctgccaaacactttacagcatactgttttatactgtagtattt 559
Query: 360 aatatccacatttatagtggtattaaaataacttattcatttctgactatgttttcaatt 419
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 catatccacatttatagtggtattaaaataacttattcatttctgactatgttttcaatt 619
Query: 420 gcagaacatattcttttatttggtcaccattgcggattccttaattaagcatattgccag 479
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 gcagcacatattcttttatttggtcaccattgcggattccttaattaagcatattgccag 679
Query: 480 cataggagttcagtgactatttcttgaataagtaaaaaaatgtgtgaccctagtgacaag 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 cataggagttcagtgactatttcttgaataagtaaaaaaatgtgtgaccctagtgacaag 739
Query: 540 gtgtggagtattaaaatatcatcaaatgctctggacacacaattttcagatcattaataa 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 gtgtggagtattaaaatatcatcaaatgctctggacacacaattttcagatcattaataa 799
Query: 600 agaaagaataaaataaaatttgtgcttttattgtctcctttatctaaatttttgag 655
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 agaaagaataaaataaaatttgtgcttttattgtctcctttatctaaatttttgag 855
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 655
Length of database: 1055
Length adjustment: 10
Effective length of query: 645
Effective length of database: 1045
Effective search space: 674025
Effective search space used: 674025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no525_o13.g1 MSMg01no525_o13.g1 CHROMAT_FILE:
MSMg01no525_o13.g1 PHD_FILE: MSMg01no525_o13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:00:40 2005
(603 letters)
>mm_chr12_63493610_63494612
Length = 1003
Score = 1135 bits (587), Expect = 0.0
Identities = 599/603 (99%), Gaps = 1/603 (0%)
Strand = Plus / Minus
Query: 1 caaaagggcagggcaaaatactatattgaaagatgttctcagaatgaaaaatcattgtgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 751 caaaagggcagggcaaaatactatattgaaagatgttctcagaatgaaaaatcattgtgt 692
Query: 61 gatggcttttgttcccagcagaagcatgtcaatacatgatactggagacaacatagtgtg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 gatggcttttgttcccagcagaagcatgtcaatacatgatactggagacaacatagtgtg 632
Query: 121 gcttctaagaattaagtcttatgaattagttctgtaagcaggtctggctcataagagatc 180
|||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct: 631 gcttctaagaattaagtcttatgaattagttccgtaagcaggtctagctcataagagatc 572
Query: 181 acaagtagctgatggttaattgtccattcccaacagaaataaatttgattcatttttata 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 acaagtagctgatggttaattgtccattcccaacagaaataaatttgattcatttttata 512
Query: 241 gaagtaatataaaaatgtaatttcaaacaatgatattcaaacaattgacattttggcatg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 gaagtaatataaaaatgtaatttcaaacaatgatattcaaacaattgacattttggcatg 452
Query: 301 ggtctctttgagtgtgggtctcacaaataatagaataacaaatttaaaattgttactgtc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 ggtctctttgagtgtgggtctcacaaataatagaataacaaatttaaaattgttactgtc 392
Query: 361 tgtcctgctttcatttcaactctaagtatttcatccttgtataatatactaggtcttgta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 tgtcctgctttcatttcaactctaagtatttcatccttgtataatatactaggtcttgta 332
Query: 421 ctgtaatgtgctagagtttatgtatatatctttaataatgaaacattgaatgcctcttta 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 ctgtaatgtgctagagtttatgtatatatctttaataatgaaacattgaatgcctcttta 272
Query: 481 taatatattgttagttgactccttagagcaatgggcagcacttcagtcacataaaataca 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 taatatattgttagttgactccttagagcaatgggcagcacttcagtcacataaaataca 212
Query: 541 agtgttaactattcttttttttttttttttttgggctttttggttttttattttttttga 600
|||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 211 agtgttaactattc-tttttttttttttttttggtctttttggttttttattttttttga 153
Query: 601 gat 603
|||
Sbjct: 152 gat 150
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 603
Length of database: 1003
Length adjustment: 10
Effective length of query: 593
Effective length of database: 993
Effective search space: 588849
Effective search space used: 588849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
