BAC Information

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BAC

Clone NameMSMg01-526A08
Chromosome12 (Build37)
Map Location 101,072,426 - 101,073,017
singlet/doubletsinglet
Overlap gene2610021K21Rik
Upstream geneEml5, LOC100039845, Ttc8, EG667779, Ches1, LOC100039892
Downstream geneTdp1, LOC100040041, Kcnk13, Psmc1, BC002230, Calm1, Ttc7b, Rps6ka5, LOC100040123, 9030617O03Rik
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-526A08.T7 (MSMg01no526_a08.b1)MSMg01-526A08.TJ (MSMg01no526_a08.g1)
ACCAG595716AG595717
length735730
length of high quality
(start - end)
594 (32 - 625)587 (65 - 651)
definitionCHROMAT_FILE: MSMg01no526_a08.b1 PHD_FILE: MSMg01no526_a08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:00:49 2005CHROMAT_FILE: MSMg01no526_a08.g1 PHD_FILE: MSMg01no526_a08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:00:49 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CGGCCGCTATACGACTCCTATAGGTAGAGGATCCGCGGAATTCACATAAA
GGACTTATGGGATAGGGACTCAGTTGGCAGGGACTGTGGTCTTGGTGGTG
TAACTGCTATTGCTATGGCTGACTACCAAGAGCCAAAGCCTGAGAACTCA
GGTGCAGTCAGTCTCCTTCAGCCCCAGCCCCAAAGATACTGAACTGTTCC
CAGCTCTGCCTTCACAAGCTAAGGCCAACGCTTTGCTCCCCCTGGGCTAT
CTGGACGTGTTTCCTCTCCATATCTACTAAATCCCAAAGAGAAGCTGCGG
CATGGGAGTCCTCGGTGTGAAATTCTCACCCATCACCTGGGTGAACTTCC
GTTGTTGTTGTTGTTGTTTGAAATTTGGATGCACCCATATACTGCAGCTT
GTTCAAATTAACCTCTTCCCTCCCCTTCTGGGAAATACAATCTTCACTCT
ATAATAACAAATTCAAGAGACTAAAGATTCACAGTCTAGAGTAGTTCTCT
TCCCAAATCCCCCATCCTGTTAGTTTAGGACACAAAGCCTTATCAAATGA
ATAATGTGGGGCGTGGGCCTGCCTGCCCCCTTTTGTCATCATGGGATTAT
GTGTGTATTTCTCCCACTCTCAGAGTTCTAAGACAAGCATGTCACCAGCT
GGGGGAGAGACGGCTCTAAGTGGCTCCTGCTCATCTGTAACTCTTTGTTG
AACTCTAAGCACACCTCACACCGAGGAATAAACTG
GGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTGTGCTAAAGCCATCTGGTCCTTGGCTTTGTGTGTG
TGTGTATGCATGTGTTTGTACATTTCGTAAACTTTTAATGATTGCTTCTA
TTTCAGTAGGAGTTATAGCTTTGTTTAAATTGCATATCTGATCTTGATTT
AACATTGGTAGATGGAATGTATTGAGAAAAATTATCCATTTCTTTTAGAT
TTTCCAAATTGGTGGTTTATAGATTTTTAACTTATGTTCTTATGATTCTC
TGAATTTCCTCAGTGTCTGTTGTTATATCTCCATTTTTGTCTCAATTTTG
TTAATTTAGAAATTATCTCTCTGCCTTTTAGTTAATTTGAATAAGGGTTT
GTTCATCTTATTGATTTTTTCCAAAGAACCAAATGTTTCATTAATCTTTG
TGTTGTTTGTATTCTATTGATCACAGCCACAAATTTATTTCTTGCCATCT
ACTCTTTATGAGTGTGACTTCCTCCTTTTGTTCTAGAGATTTCAGGTGTG
CTGCTGAGTTACTAATATGAGAGCTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTTTAATGTAGGCACTTAGTGCTATGAGCTTGC
CTCTTAGAACCACCTTCATTGTGTTCCAAAAATATAGGTGTATTGTGCCT
TCATTTTCATCCAATTCTAGAAGTCTTTAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no526_a08.b1 MSMg01no526_a08.b1 CHROMAT_FILE:
MSMg01no526_a08.b1 PHD_FILE: MSMg01no526_a08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:00:49 2005
         (594 letters)



>mm_chr12_101072220_101073217
          Length = 998

 Score = 1083 bits (560), Expect = 0.0
 Identities = 583/592 (98%), Gaps = 4/592 (0%)
 Strand = Plus / Minus

                                                                       
Query: 7   gaattcacataaaggacttatgggatagggactcagttggcagggactgtggtcttggtg 66
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 gaattcacataaaggacttatgggatagggactcagttggcagggactgtggtcttggtg 739

                                                                       
Query: 67  gtgtaactgctattgctatggctgactaccaagagccaaagcctgagaactcaggtgcag 126
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 738 gtgtaactgctattgctatgactgactaccaagagccaaagcctgagaactcaggtgcag 679

                                                                       
Query: 127 tcagtctccttcagccccagccccaaagatactgaactgttcccagctctgccttcacaa 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 tcagtctccttcagccccagccccaaagatactgaactgttcccagctctgccttcacaa 619

                                                                       
Query: 187 gctaaggccaacgctttgctccccctgggctatctggacgtgtttcctctccatatctac 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 gctaaggccaacgctttgctccccctgggctatctggacgtgtttcctctccatatctac 559

                                                                       
Query: 247 taaatcccaaagagaagctgcggcatgggagtcctcggtgtgaaattctcacccatcacc 306
           |||||||| ||| |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 558 taaatcccgaagcgaagctgcggcatgggagtcctcgctgtgaaattctcacccatcacc 499

                                                                       
Query: 307 -t---gggtgaacttccgttgttgttgttgttgtttgaaatttggatgcacccatatact 362
            |   |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 attcagggtgaacttccgttgttgttgttgttgtttgaaatttggatgcacccatatact 439

                                                                       
Query: 363 gcagcttgttcaaattaacctcttccctccccttctgggaaatacaatcttcactctata 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 gcagcttgttcaaattaacctcttccctccccttctgggaaatacaatcttcactctata 379

                                                                       
Query: 423 ataacaaattcaagagactaaagattcacagtctagagtagttctcttcccaaatccccc 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 ataacaaattcaagagactaaagattcacagtctagagtagttctcttcccaaatccccc 319

                                                                       
Query: 483 atcctgttagtttaggacacaaagccttatcaaatgaataatgtggggcgtgggcctgcc 542
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 318 atcctgttagtttaggacacaaagccttatcaaatgaataatgtgaggcgtgggcctgcc 259

                                                               
Query: 543 tgcccccttttgtcatcatgggattatgtgtgtatttctcccactctcagag 594
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 tgcccccttttgtcatcatgggattatgtgtgtatttctcccactctcagag 207


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 594
Length of database: 998
Length adjustment: 10
Effective length of query: 584
Effective length of database: 988
Effective search space:   576992
Effective search space used:   576992
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)