BAC Information

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BAC

Clone NameMSMg01-526C22
Chromosome12 (Build37)
Map Location 60,355,173 - 60,355,711
singlet/doubletsinglet
Overlap genenone
Upstream geneClec14a, LOC100040183, Sec23a, Sip1, Trappc6b, Pnn, EG544872, Mia2, Mgea6, Fbxo33
Downstream geneLOC665628, LOC238199, LOC665639, LOC665644, EG622488
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-526C22.T7 (MSMg01no526_c22.b1)MSMg01-526C22.TJ (MSMg01no526_c22.g1)
ACCAG595838AG595839
length742756
length of high quality
(start - end)
637 (39 - 675)544 (73 - 616)
definitionCHROMAT_FILE: MSMg01no526_c22.b1 PHD_FILE: MSMg01no526_c22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:01:01 2005CHROMAT_FILE: MSMg01no526_c22.g1 PHD_FILE: MSMg01no526_c22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:01:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTT
TGTTCAGTTCTGAGCCCCATTTTTTAATGGGGTTGTTTGATTTTCTGAAG
TCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCTATCTGA
TTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTCTTTGTCT
TATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATTAGGTCC
CATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTTCTGTTCAG
GAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCACTTTCTCCT
CTATAAGTTTAAGTGTCTCTGGTTTTATGTGAAGTTCTTTGATCCATTTA
GATTTGACCTTAGTACAAGGAGATAAGTATGGATCGATTCGCATTCTTCT
ACATGATAACAACCAGTTGTGCCAGCACCATTTGTTGAAAATGCTGTCTT
TCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAGTGACCATAG
GTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATTGGTCTACTTG
TCTGTCTCTATACCAGTACCATGCAGTTTTTACCACAATTGCTCTGTAGT
AAAGCTTTAGGTCCGGCATGGTGATTCCACCAGAGGTTCTTTTATCCTTG
AGAAAGTTTTTGCTATCCTANGNTTTTTGTTATTCCAGATGA
TGAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAGAAGGAAGAAACACTTAAAGGTTAAGAAC
ACAAAAGAAGTGCATATGTGTGTACATGCACACACATACATTAAAAAATA
GAAAGCCCTCATTAAAAGAAAGATACAGATCTGTAGCTTGGAGGGTACCT
GCTGGGGACCAATCCCAGTGTAGATGAAGTTCTTCTTTCTTGTCAGTTCT
TCTTGAGGAAGTGGAAAGGAGAAGAGTGTAGGCTGATGATGGTAAGACTC
TGTCTTACGAGATTCTAGGGTAAGACTTTGTCTTACAAGAAATTTAGGGT
TGCTGTACAATAAAAAGTTTACTTATCTAAATTACTATGCTATTGTAGCT
GACCTGCCTTCTCTGTTCCTGAGGCCAGAGACTGCAGTCTCAGGCACTTA
GCACCTCTGCCTAAAACAGCAGGAGTTTAAGTAAAGGATTAATTGCTAGA
GCCTTTTCCCTATTGCCCAGATGCCTCTTGCTTGTTGTAGGGGGAGGTTT
GGCGCAACAAACTTCTATTGAACCAGGAGAGGAGAATAACATTTGCAGAA
GGAAAAACTTTTATATAAGCAGGTATGCATAATCTCACATAAGTTCATAT
ACAGATTCATTTACAGTTGGGCCCAGCCTGCATGCATTCTCACAATTACA
TACTTACACACACATCCATACTAACATATGCATATGGAGCAAAAGACCAG
CACTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no526_c22.g1 MSMg01no526_c22.g1 CHROMAT_FILE:
MSMg01no526_c22.g1 PHD_FILE: MSMg01no526_c22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:01:01 2005
         (544 letters)



>mm_chr12_60354973_60355916
          Length = 944

 Score =  932 bits (482), Expect = 0.0
 Identities = 527/544 (96%), Gaps = 5/544 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaggaagaaacacttaaaggttaagaacacaaaagaagtgcatatgtgtgtacatgcaca 60
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 201 aaggaagaaacacttaaaggttaagaacacaaaagaagtgcatatatgtgtacatgcaca 260

                                                                       
Query: 61  cacatacattaaaaaatagaaagccctcattaaaagaaagatacagatctgtagcttgga 120
           |||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct: 261 cacatacattaaaaaatagaaagccctcattaaaaggaaggtacagatctgtagcttgga 320

                                                                       
Query: 121 gggtacctgctggggaccaatcccagtgtagatgaagttcttctttcttgtcagttcttc 180
           ||| ||||||||||||||||||||||||| ||||||||||    ||||||||||||||||
Sbjct: 321 gggcacctgctggggaccaatcccagtgtggatgaagttc----ttcttgtcagttcttc 376

                                                                       
Query: 181 ttgaggaagtggaaaggagaagagtgtaggctgatgatggtaagactctgtcttacgaga 240
           |||||||||||| | || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 ttgaggaagtgg-agggggaagagtgtaggctgatgatggtaagactctgtcttacgaga 435

                                                                       
Query: 241 ttctagggtaagactttgtcttacaagaaatttagggttgctgtacaataaaaagtttac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 ttctagggtaagactttgtcttacaagaaatttagggttgctgtacaataaaaagtttac 495

                                                                       
Query: 301 ttatctaaattactatgctattgtagctgacctgccttctctgttcctgaggccagagac 360
           |||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 496 ttatctaagttactatgctattgtagctgacctgccttctgtgttcctgaggccagagac 555

                                                                       
Query: 361 tgcagtctcaggcacttagcacctctgcctaaaacagcaggagtttaagtaaaggattaa 420
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 tgcagtcttaggcacttagcacctctgcctaaaacagcaggagtttaagtaaaggattaa 615

                                                                       
Query: 421 ttgctagagccttttccctattgcccagatgcctcttgcttgttgtagggggaggtttgg 480
           ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct: 616 ttgctagagccttttccctgttgtccagatgcctcttgcttgttgtagggggaggtttgg 675

                                                                       
Query: 481 cgcaacaaacttctattgaaccaggagaggagaataacatttgcagaaggaaaaactttt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 cgcaacaaacttctattgaaccaggagaggagaataacatttgcagaaggaaaaactttt 735

               
Query: 541 atat 544
           ||||
Sbjct: 736 atat 739


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 544
Length of database: 944
Length adjustment: 10
Effective length of query: 534
Effective length of database: 934
Effective search space:   498756
Effective search space used:   498756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)