Query= MSMg01no526_d01.b1 MSMg01no526_d01.b1 CHROMAT_FILE:
MSMg01no526_d01.b1 PHD_FILE: MSMg01no526_d01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:01:02 2005
(589 letters)
>mm_chr12_41274756_41275737
Length = 982
Score = 982 bits (508), Expect = 0.0
Identities = 554/586 (94%), Gaps = 29/586 (4%)
Strand = Plus / Plus
Query: 4 ggaattcagatgggtctcacagtacagaaggcctctatgacctacttctccaatccatgg 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 224 ggaattcagatgggtctcacagtacagaaggcctctatgacctacttctccaatccatgg 283
Query: 64 aaatctttttagtgcctgatgataaatagtgtgcatgtatacatgtgtgtacgtgtgtgt 123
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 aaatctttttagtgcctgatgataaatagtgtgcatgtatacatgtgtgtac-------- 335
Query: 124 gtgtatatgtgtgtgtgtgtgtgtgtgtgtggctctggttttaaggcctaatggtccaga 183
||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 336 ------atgtgtgtgtgtgtgtgtg------gctctggttttaaggcctaatggtccaga 383
Query: 184 gctaccttatctagtagaataaaatgaaaatcaaagttatattggtatctttataattgt 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gctaccttatctagtagaataaaatgaaaatcaaagttatattggtatctttataattgt 443
Query: 244 tgtattctaattttgtccacaaattagttggctggaactttgggctcaatattaagtctg 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tgtattctaattttgtccacaaattagttggctggaactttgggctcaatattaagtctg 503
Query: 304 tgaagacaaaaaaatgaataagtaataagtaataagaatgaataagtaaaagaggtgcca 363
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 504 tgaagacaaaagaatgaataagtaataag-------aatgaataagtaaaagaggtgcca 556
Query: 364 gtgaacattccctggtgcgttttggttttgcctttcttatttttttctacccccaccccg 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 gtgaacattccctggtgcgttttggttttgcctttcttatttttttctacccccaccccg 616
Query: 424 tttttgtataaagtctcattgtgtagctcagactgacactttgagccttctgcctcagcc 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 tttttgtataaagtctcattgtgtagctcagactgacactttgagccttctgcctcagcc 676
Query: 484 gcttgaaagctggtttatagatgtgtaccacgatacctagtcctctttttttttttttaa 543
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct: 677 gcttgaaagctggtttatagatgcgtaccacgatacctagtcctctttttttttttt--a 734
Query: 544 aatgcaaaaccaacagccctacctttatcattgagagttctaccta 589
|||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 735 aatgcaaaaccaacagcccttcctttatcattgagagttctaccta 780
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 589
Length of database: 982
Length adjustment: 10
Effective length of query: 579
Effective length of database: 972
Effective search space: 562788
Effective search space used: 562788
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no526_d01.g1 MSMg01no526_d01.g1 CHROMAT_FILE:
MSMg01no526_d01.g1 PHD_FILE: MSMg01no526_d01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:01:02 2005
(623 letters)
>mm_chr12_41429584_41430608
Length = 1025
Score = 1062 bits (549), Expect = 0.0
Identities = 609/647 (94%), Gaps = 31/647 (4%)
Strand = Plus / Minus
Query: 1 actctgtagatcaggctgacctcgtgctcagagctgcttatctctgcttcccaagtgctg 60
||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 646 actctgtagatcaggctgacctcctactcagagctgcttatctctgcttcccaagtgctg 587
Query: 61 ggattaaaggcctgagccagcaagctaaatagtttttgtttgtttgtttcttttattctg 120
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 586 ggattaaaggcctgagccagcaagctaaatag-gtttgtttgtttgtttcttttattctg 528
Query: 121 cttggctttgttgttgttgttgttgttgtttttccccaattgccagaacaaaaaaaaa-- 178
||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 cttggct------ttgttgttgttgttgtttttccccaattgccagaacaaaaaaaaaag 474
Query: 179 taagaaaaaaattaaatgatactaaaatactgtatttaaggaatgactattataataaaa 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 taagaaaaaaattaaatgatactaaaatactgtatttaaggaatgactattataataaaa 414
Query: 239 ttattggtatacatagtcaggaaagtgaaaacaccgtttccatttatatatatagcatgt 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 ttattggtatacatagtcaggaaagtgaaaacaccgtttccatttatatatatagcatgt 354
Query: 299 tccatgtgtatatac----------------------atatatacatatatatatatagt 336
||||||||||||||| ||||||| |||||||||||||||
Sbjct: 353 tccatgtgtatatacatatatatatatatatatatatatatatatatatatatatatagt 294
Query: 337 atgtatacacatatacatatatatagtatgtgagtgttctgtttaaatgtatgactgtat 396
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 atgtatacacatatacatatatatagtatgtgagtgttctgtttaaatgtatgactgtat 234
Query: 397 gagaggagagcatcagacggttgtgagccaccatgtgggtgctgggaattgaactcagga 456
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 233 gagaggagagcatcagatggttgtgagccaccatgtgggtgctgggaattgaactcagga 174
Query: 457 cctctgagtgcttttaaccactgagccatctctctggccccttaatgaactttaaaaaaa 516
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 173 cctctgagtgcttttaaccactgagccatctctctggccccttaatgaactttaaaaaat 114
Query: 517 gaaaataaaaagcctacatagagttagaaaaaaaaacactggcaactgagaaattaaatg 576
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113 gaaaataaaaagcctacatagagttagaaaaaaaaacactggcaactgagaaattaaatg 54
Query: 577 atcacaggtagagatgaggccaagcaagggttgtcagaccaacggcc 623
||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 53 atcacaggtagagatgaagccaagcaagggttgtcagaccaacggcc 7
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 58
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 623
Length of database: 1025
Length adjustment: 10
Effective length of query: 613
Effective length of database: 1015
Effective search space: 622195
Effective search space used: 622195
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
