BAC Information

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BAC

Clone NameMSMg01-526D09
Chromosome12 (Build37)
Map Location 120,966,633 - 120,967,187
singlet/doubletsinglet
Overlap genenone
Upstream geneEG668615, LOC620665, Sp8, Abcb5, Itgb8, EG627557, LOC100043011, 4732474O15Rik, LOC668632
Downstream geneLOC668633, Gm528, LOC100043017
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-526D09.T7 (MSMg01no526_d09.b1)MSMg01-526D09.TJ (MSMg01no526_d09.g1)
ACCAG595860AG595861
length740739
length of high quality
(start - end)
576 (40 - 615)555 (70 - 624)
definitionCHROMAT_FILE: MSMg01no526_d09.b1 PHD_FILE: MSMg01no526_d09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:01:03 2005CHROMAT_FILE: MSMg01no526_d09.g1 PHD_FILE: MSMg01no526_d09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:01:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
CACCTGATGAATACCAAAAGGCTGAGAAGCACCTGAAAAAAATGTTCAAC
ATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCTACC
TCACACCAGTCAGAATGGCTAAGGTCAAAAATTCAGGTGACAGCAGATGC
TGGCAAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGAATTG
CAATCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAAAAAAA
ATGGACATAGTACTAACGGAGGATCCTGCAATACCTCTCCTGGGCATATA
TCCAGATGTTCCAACCGGTAAGAAGGACACATGTTCCACTATGTTCATAG
CAGCCTTTTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGACCCTCAA
CAGAGGAATGGATACAGAAAATGTGGTACATGTACACAATGGAGTAGTAC
TCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGGCAAATGGATGGA
CCTACTTTAGTTTTTCTAATGGGTTAAGAATTACTAAAACCATGTGGGAC
CATGGATAGGCAGGGGTTCAAAGCACGGATCTGTCTGCCAAAAGGTAGAA
ACGTTTCAGACAAAAATTTGTAAGAATTCTCTCTCCTTTCCATTCTTTGA
GTCNAGATGTCTTTTGTGACAATCCCTCTGTGTGCATCAT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXATAACTCAAAGTTTGAGAACCTCTATAGATC
TTAAAATTTGTTAACTTTGGGTCCATAAAGGAATTGCTTATAAGTGGAAG
GGTATGTATCTTAATATTTTGTCATTTTACAAGAACCAAAGCAGAATAAA
ATAATAATTTATGCTGCTTAGAAAAGAATAATGTATTTGATTTATTACAA
AGCCTATATTTTTACACTCCAAAGATATTTTTCATTCCCCTATCATATAA
TTCAATATCTTTCCTAATTTACTATAAATTAACTTTTTTTTTTAAACAAA
CAGAAGTTGCATTTTCTACTGATTAAAAAGCCACATTTGACACCATCATT
CTCTGCATACCTATTGTTTGGGCTAACATGGAACTTGATTTTTGAAACAT
TTTATTTAAAAAATCAGAGATTATTATGACAGCCTTATAAGTGGTAGATG
GAATATATTTTCACAAAAAAGCTTAGCCACAGTGGTATTCCAGTTGTATT
TTGAATCATGTCACAAAACTAAATTCTATTTCTAATTTTACTATGCCTTC
ACTCAAAAAGCTGTATCTTTCTCTTTAGAATGTTTGTTTATAACAACTAA
AAAGTGTCTTTAAAATGCTAATGGTGTACTATGGTATATGTGCCAAGATA
ATTAGCTCCTTTTTTAGTTAGATTTAAGGAAACCTGGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no526_d09.g1 MSMg01no526_d09.g1 CHROMAT_FILE:
MSMg01no526_d09.g1 PHD_FILE: MSMg01no526_d09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:01:04 2005
         (555 letters)



>mm_chr12_120966433_120967387
          Length = 955

 Score = 1058 bits (547), Expect = 0.0
 Identities = 553/555 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ataactcaaagtttgagaacctctatagatcttaaaatttgttaactttgggtccataaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 ataactcaaagtttgagaacctctatagatcttaaaatttgttaactttgggtccataaa 696

                                                                       
Query: 61  ggaattgcttataagtggaagggtatgtatcttaatattttgtcattttacaagaaccaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 ggaattgcttataagtggaagggtatgtatcttaatattttgtcattttacaagaaccaa 636

                                                                       
Query: 121 agcagaataaaataataatttatgctgcttagaaaagaataatgtatttgatttattaca 180
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 635 agcagaataaaataataatttttgctgcttagaaaagaataatgtatttgatttattaca 576

                                                                       
Query: 181 aagcctatatttttacactccaaagatatttttcattcccctatcatataattcaatatc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 aagcctatatttttacactccaaagatatttttcattcccctatcatataattcaatatc 516

                                                                       
Query: 241 tttcctaatttactataaattaacttttttttttaaacaaacagaagttgcattttctac 300
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 515 tttcctaatttactataaattaactttttttttaaaacaaacagaagttgcattttctac 456

                                                                       
Query: 301 tgattaaaaagccacatttgacaccatcattctctgcatacctattgtttgggctaacat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 tgattaaaaagccacatttgacaccatcattctctgcatacctattgtttgggctaacat 396

                                                                       
Query: 361 ggaacttgatttttgaaacattttatttaaaaaatcagagattattatgacagccttata 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 ggaacttgatttttgaaacattttatttaaaaaatcagagattattatgacagccttata 336

                                                                       
Query: 421 agtggtagatggaatatattttcacaaaaaagcttagccacagtggtattccagttgtat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 agtggtagatggaatatattttcacaaaaaagcttagccacagtggtattccagttgtat 276

                                                                       
Query: 481 tttgaatcatgtcacaaaactaaattctatttctaattttactatgccttcactcaaaaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 tttgaatcatgtcacaaaactaaattctatttctaattttactatgccttcactcaaaaa 216

                          
Query: 541 gctgtatctttctct 555
           |||||||||||||||
Sbjct: 215 gctgtatctttctct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 555
Length of database: 955
Length adjustment: 10
Effective length of query: 545
Effective length of database: 945
Effective search space:   515025
Effective search space used:   515025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)