BAC Information

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BAC

Clone NameMSMg01-527M02
Chromosome12 (Build37)
Map Location 31,984,254 - 31,984,874
singlet/doubletsinglet
Overlap geneLamb1-1
Upstream geneSntg2, Tmem18, LOC100043055, Acp1, Sh3yl1, LOC629656, 9030611O19Rik, LOC668781, LOC100043065, LOC100043514, EG629667, LOC100043068
Downstream geneDld, LOC668786, Slc26a3, Cbll1, Slc26a4, LOC100043531, Bcap29, Dus4l, LOC100043081, Gpr22, Hbp1, Prkar2b, Pik3cg
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-527M02.T7 (MSMg01no527_m02.b1)MSMg01-527M02.TJ (MSMg01no527_m02.g1)
ACCAG597033AG597034
length737741
length of high quality
(start - end)
633 (53 - 685)657 (83 - 739)
definitionCHROMAT_FILE: MSMg01no527_m02.b1 PHD_FILE: MSMg01no527_m02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:03:07 2005CHROMAT_FILE: MSMg01no527_m02.g1 PHD_FILE: MSMg01no527_m02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:03:08 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CGGGAAGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCCCAGATCTAGGCTTATTATGATGAGTGGGAATTTTTGT
TAACTTGTTTTTGTTTAGTTTTGTGGTGTTTTTTTTTTGGGGGGGGGACA
GGGTCTTGCTTTGTAGCTGAGGCTAACCTTGAACTCAAATCCTGCCTCAT
TCTCTTGAGTGCCGGGATTAGAGATGTATATGAAGCGCAATAGCCCCTAA
GGAGAGTTTTGATCAACTGATCCAAAGGGAAGAAAGGAGATGTGAAGAGG
GGTTTGCTGAGAATCACTCTTAGTGCCAGATACAGGAAATGGCCAGAGCT
GCTCTTGGAGAAAGGACCAGGATCAGAAAAGGCTGTCTTGAGCAGGAGGT
GGTCCTTACGTGAGCCTCACCGGGAGGAAGCAGGTGTTAGTCGGGTCTGC
AGCTGGGTAGTAACAGAGGAAGCGTTAGGGATGGAAAGCAAACTGTCTGC
TTTCTAATGACTCAGTCACTGTGGAGAGGTCCTCCCAGTTGGACTGACCG
CAGTGGGCTCGCACAGATACTCCTTTTGATCCTTTGTTTCCTGTTCTAGC
TGCCGGACCACTGGGAGAAAGCTGTCATCACTGTACAGCGGCCGGGGAAG
ATTCCAGCCAGCAGCCGATGTGGTAACACCGTTCCCGATGATGACAACCA
GGTGGTGTCCTTGTCACCGGGCTCAAGGTCAGTCGAT
AAAANNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAGCTGAGGAATACCGA
AGGGCTGAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGA
AATGCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGG
CTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGTGAGGATGTGGAGAA
AGAGGGACACTCTTCCATTCCTGGTGGGATTGCAAGCTTGTACAACCACT
CTGGAAATCAGTCTGGCGGTTCCTCAGAAAACTGGATATAGTACCACCGG
AAGATCCAGCAATACCTCTCCTGGGCATATACCCAGAAGATGCTCCAACT
GGTAAAAAGGACACATGTTCCACTAGTTCATAGCAGCCTTATTTATAATA
GCCAGAAGCTGGAAAGAACCCAGATGTCCCTCAACAGAGGACTGAATACA
AAAAGTGTGGTACATTTACATAATGGAGTACTACTCAGCTATTAAAAACA
ATAAATTTTAGCTGGGCGTGGTGGCACACGCCTTTAATCCCAGCTCTTGG
GAGGCAGAGGCAGGCAGATTTCTGAGTTTGAGGTCAGCCTGGTCTACAAA
GTGAGTTCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTCAAAAAA
AAAAATCAAAACAAAACAAAACAATGAATTTATGAAATTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no527_m02.b1 MSMg01no527_m02.b1 CHROMAT_FILE:
MSMg01no527_m02.b1 PHD_FILE: MSMg01no527_m02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:03:07 2005
         (633 letters)



>mm_chr12_31984042_31985074
          Length = 1033

 Score = 1098 bits (568), Expect = 0.0
 Identities = 611/630 (96%), Gaps = 9/630 (1%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcccagatctaggcttattatgatgagtgggaatttttgttaacttgtttttgtt 63
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 213 ggaattcccagatctaggcttattatgatgagtgggaatttttgttaactggtttttgtt 272

                                                                       
Query: 64  tagttttgtggtgttttttttttgggggggggacagggtcttgctttgtagctgaggcta 123
           |||||||   |||||||| |||       ||||||||||||||||||||| |||||||||
Sbjct: 273 tagtttt---gtgtttttcttt------agggacagggtcttgctttgtatctgaggcta 323

                                                                       
Query: 124 accttgaactcaaatcctgcctcattctcttgagtgccgggattagagatgtatatgaag 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 324 accttgaactcaaatcctgcctcattctcttgagtgccgggattagagatgtatacgaag 383

                                                                       
Query: 184 cgcaatagcccctaaggagagttttgatcaactgatccaaagggaagaaaggagatgtga 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 cgcaatagcccctaaggagagttttgatcaactgatccaaagggaagaaaggagatgtga 443

                                                                       
Query: 244 agaggggtttgctgagaatcactcttagtgccagatacaggaaatggccagagctgctct 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 agaggggtttgctgagaatcactcttagtgccagatacaggaaatggccagagctgctct 503

                                                                       
Query: 304 tggagaaaggaccaggatcagaaaaggctgtcttgagcaggaggtggtccttacgtgagc 363
           |||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 504 tggagaaaggaccagggtcagaaaaggctgtcttgagcaggaggtggtccttccgtgagc 563

                                                                       
Query: 364 ctcaccgggaggaagcaggtgttagtcgggtctgcagctgggtagtaacagaggaagcgt 423
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 cttaccgggaggaagcaggtgttagtcgggtctgcagctgggtagtaacagaggaagcgt 623

                                                                       
Query: 424 tagggatggaaagcaaactgtctgctttctaatgactcagtcactgtggagaggtcctcc 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tagggatggaaagcaaactgtctgctttctaatgactcagtcactgtggagaggtcctcc 683

                                                                       
Query: 484 cagttggactgaccgcagtgggctcgcacagatactccttttgatcctttgtttcctgtt 543
           |||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 684 cagttggactgaccacagtgggctcgcacagatactccttttgattctttgtttcctgtt 743

                                                                       
Query: 544 ctagctgccggaccactgggagaaagctgtcatcactgtacagcggccggggaagattcc 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 ctagctgccggaccactgggagaaagctgtcatcactgtacagcggccggggaagattcc 803

                                         
Query: 604 agccagcagccgatgtggtaacaccgttcc 633
           ||||||||||||||||||||||||||||||
Sbjct: 804 agccagcagccgatgtggtaacaccgttcc 833


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 633
Length of database: 1033
Length adjustment: 10
Effective length of query: 623
Effective length of database: 1023
Effective search space:   637329
Effective search space used:   637329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)