Query= MSMg01no527_p18.b1 MSMg01no527_p18.b1 CHROMAT_FILE:
MSMg01no527_p18.b1 PHD_FILE: MSMg01no527_p18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:03:27 2005
(645 letters)
>mm_chr12_120491923_120492968
Length = 1046
Score = 1077 bits (557), Expect = 0.0
Identities = 569/573 (99%), Gaps = 1/573 (0%)
Strand = Plus / Minus
Query: 74 cagaattcaatcttaaaaggcacttataatagtatggtactgaaagagagcacggataca 133
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1046 cagaattcaatcttaaaaggcacttataatagtatggtactgaaagagagcacggataca 987
Query: 134 tacactagactaacaaggaaatggagaattaagagaactccagactccaggaggagagct 193
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 986 tacactagactaacgaggaaatggagaattaagagaactccagactccaggaggagagct 927
Query: 194 tccttgaaactctttttgcctcatgagcagcttttaggcatccctgcctgacaggctgac 253
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 926 tccttgaaactctttttgcctcatgagcagcttttaggcatccctgcctgacaggctgac 867
Query: 254 tcgactggagtgccgtgacacctcacttctaaccaatgagacatttggaaaacagaaaat 313
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 866 tcgactggagtgttgtgacacctcacttctaaccaatgagacatttggaaaacagaaaat 807
Query: 314 gcacaagcttaaccatggagcagaagtcagcagtcatggtacttaagtgtactcacactg 373
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 806 gcacaagcttaaccatggagcagaagtcagcagtcatggtacttaagtgtactcacactg 747
Query: 374 gaagtgggaagttgggtacaggctataaagaaaatcagtttccagaaaaccatgagtgaa 433
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 gaagtgggaagttgggtacaggctataaagaaaatcagtttccagaaaaccatgagtgaa 687
Query: 434 ggtagagaagcaagaagcttgtgataaattcagggagtgacagactgcttggtgtacaaa 493
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 ggtagagaagcaagaagcttgtgataaattcagggagtgacagactgcttggtgtacaaa 627
Query: 494 acaagtaaccaatggtgtttggaagggctttttacccaaattccaggaaatgggctggta 553
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 acaagtaaccaatggtgtttggaagggctttttacccaaattccaggaaatgggctggta 567
Query: 554 gattggacaatacaatccctatca-tttttgttgtgattactggattgcggcttaactaa 612
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 566 gattggacaatacaatccctatcattttttgttgtgattactggattgcggcttaactaa 507
Query: 613 tttaagtaaagagaaaagatgattatgaagaca 645
|||||||||||||||||||||||||||||||||
Sbjct: 506 tttaagtaaagagaaaagatgattatgaagaca 474
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 645
Length of database: 1046
Length adjustment: 10
Effective length of query: 635
Effective length of database: 1036
Effective search space: 657860
Effective search space used: 657860
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no527_p18.g1 MSMg01no527_p18.g1 CHROMAT_FILE:
MSMg01no527_p18.g1 PHD_FILE: MSMg01no527_p18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:03:27 2005
(659 letters)
>mm_chr12_120301678_120302732
Length = 1055
Score = 1191 bits (616), Expect = 0.0
Identities = 646/658 (98%), Gaps = 4/658 (0%)
Strand = Plus / Plus
Query: 1 ttttagtctctccctgatttatactgccaaagagactctgaacatggtcacagccaagaa 60
||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct: 201 ttttagtctctccctgatttacactgccaaagagactctgaacatggtcacagctaagaa 260
Query: 61 gaacagatttctttatatttatttggaaaatctctattgagaattctttctattctgagt 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 261 gaacagatttctttatatttatttggaaaatctctattgagaattctttctattttgagt 320
Query: 121 ctgtgttctgcaattaagaggcaacactgaatggaagaaagacttttccctaaaggagct 180
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 321 ctgtgttctgcaattaagaggcaacacagaatggaagaaagacttttccctaaaggagct 380
Query: 181 aactgacatggctgggaggcagaaatgaaagcagataatgcctaaggaacaagtgtgata 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aactgacatggctgggaggcagaaatgaaagcagataatgcctaaggaacaagtgtgata 440
Query: 241 ttaaatagacagaaagcccatcttccttcccagcccagggaatgagcctgctcttgtttc 300
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 441 ttaaatagacagaaagcccatcttcc----cagcccagggaatgagcctgctcttgtttc 496
Query: 301 aattctattgctctgatgaaatatcctaacaaaagcaacttaggaaagagtctgtttatt 360
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 497 aattctattgctctgatgaaatatcctaacaaaagcaacttaggaaagagtccgtttatt 556
Query: 361 tcagcttacagtttcaggttatatacaatctgtcattgtgggtaagccatagtagcagga 420
| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 557 ttagcttacagtttcaggttatatacaatctgtcattgtgggtaagacatagtagcagga 616
Query: 421 gtttgaaacagctggttatactttatctataaccaagaagtagagaagaactcattaatg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 gtttgaaacagctggttatactttatctataaccaagaagtagagaagaactcattaatg 676
Query: 481 aatgtgtgcttgtgcttagctcattttccggtgcttacacagttcaggactcactatcta 540
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 677 aatgtgtgcttgtgcttagctcattttctggtgcttacacagttcaggactcactatcta 736
Query: 541 aggaatggtggcacccacagtggaagggtcttcccacctccattaacttagtcaagacaa 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 aggaatggtggcacccacagtggaagggtcttcccacctccattaacttagtcaagacaa 796
Query: 601 tcctctaaagacctgtccaggccaacccaatctagatagtccctctaaccacactctt 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797 tcctctaaagacctgtccaggccaacccaatctagatagtccctctaaccacactctt 854
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 659
Length of database: 1055
Length adjustment: 10
Effective length of query: 649
Effective length of database: 1045
Effective search space: 678205
Effective search space used: 678205
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
