Query= MSMg01no528_d22.b1 MSMg01no528_d22.b1 CHROMAT_FILE:
MSMg01no528_d22.b1 PHD_FILE: MSMg01no528_d22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:03:47 2005
(647 letters)
>mm_chr12_36442352_36443398
Length = 1047
Score = 988 bits (511), Expect = 0.0
Identities = 517/519 (99%)
Strand = Plus / Minus
Query: 129 catagacatggatgtgcaagtacttctcttggagggtataaagttctctgggattgcaca 188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1047 catagacatggatgtgcaagtacttctcttggagggtataaagttctctgggattgcaca 988
Query: 189 taggagtgttataacatggtcattggtagttctagttttagctttatgagaaacctccac 248
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 987 taggagtgttataacatggtcattggtagttctagttttagctttatgagaaacctccac 928
Query: 249 actgatttctctggtggctggacaagtttattatattctcaccaacaatgcagaagggtt 308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 927 actgatttctctggtggctggacaagtttattatattctcaccaacaatgcagaagggtt 868
Query: 309 ccttttccccatatcctcacgaggctgcctgccttcctgcctgtctcatgtaaacagccc 368
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 867 ccttttccccatatcctcatgaggctgcctgccttcctgcctgtctcatgtaaacagccc 808
Query: 369 atttgttggcttcagggtacaggatataagtatctgacggcctcatcccagcctcccgta 428
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 807 atttgttggcttcagggtacaggatataagtatctgacggcctcatcccagcctcccgta 748
Query: 429 ttgaaagcagtgtaatatcccataggttattatgggatattattatattccataggttat 488
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747 ttgaaagcagtgtaatatcccataggttattatgggatattattatattccataggttat 688
Query: 489 aggttacagtctctctgagtgtcccagttcatatcaaccatgccctgggtttcttctttc 548
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 aggttacagtctctctgagtgtcccagttcatatcaaccatgccctgggtttcttctttc 628
Query: 549 ttcccactctattctttagggttttggtgactctcccatggttgcaagatgactctcatg 608
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 627 ttcccactctattctttagggttttgctgactctcccatggttgcaagatgactctcatg 568
Query: 609 gcaagcagcacattatttgcctttaacacactaaaagat 647
|||||||||||||||||||||||||||||||||||||||
Sbjct: 567 gcaagcagcacattatttgcctttaacacactaaaagat 529
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 647
Length of database: 1047
Length adjustment: 10
Effective length of query: 637
Effective length of database: 1037
Effective search space: 660569
Effective search space used: 660569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no528_d22.g1 MSMg01no528_d22.g1 CHROMAT_FILE:
MSMg01no528_d22.g1 PHD_FILE: MSMg01no528_d22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:03:47 2005
(612 letters)
>mm_chr12_36352623_36353634
Length = 1012
Score = 1139 bits (589), Expect = 0.0
Identities = 607/613 (99%), Gaps = 2/613 (0%)
Strand = Plus / Plus
Query: 1 aaatttttttcctgtattccaggtttgtaatctctccatctgccacagtgcctccttctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaatttttttcctgtattccaggtttgtaatctctccatctgccacagtgcctccttctt 260
Query: 61 ggtaaagagctagctatagcaacacactgtagacttcatcatccatgtatattacatgct 120
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 261 ggtaaagagctagctatagcaacacactgtagacttcatcatccatgtatatgacatgct 320
Query: 121 cataagaaaggtacttcttggggttggaaaatgactgaggatagagcccttgctgcacaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cataagaaaggtacttcttggggttggaaaatgactgaggatagagcccttgctgcacaa 380
Query: 181 cttaaaggcgtgagcttaatcccaagaatcaatgtgaaaaagaaaaggcctgg-tgcagg 239
||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct: 381 cttaaaggcgtgagcttaatcccaagaatcaatgtgaaaaagaaaaggc-tgggtgcagg 439
Query: 240 tagcacatgcgttagtaactctagtgctagagaggcacagagaacaaagatcccgggggc 299
|||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tagcgcatgcgtcagtaactctagtgctagagaggcacagagaacaaagatcccgggggc 499
Query: 300 ttggtggccagatcatctaacagaagcattgagctccagattaagtgagagacatcatct 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ttggtggccagatcatctaacagaagcattgagctccagattaagtgagagacatcatct 559
Query: 360 caaataataataataatcgtggttgatgaagacacacaatgttgatgactacactccaca 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 caaataataataataatcgtggttgatgaagacacacaatgttgatgactacactccaca 619
Query: 420 tgcacacgtctgttcacatctcttcacatgtgtgcacacatgcagaaaggttgtgtgcct 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tgcacacgtctgttcacatctcttcacatgtgtgcacacatgcagaaaggttgtgtgcct 679
Query: 480 ccttatgaacttaagagctgtcactcttataatggtacttgtttttaatttggaattaat 539
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 680 ccttatgaacttaagagctgtcacttttataatggtacttgtttttaatttggaattaat 739
Query: 540 gaagcatttgaaaccaaatgaaagtttagatgatactacataatatccaccaacctttta 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 gaagcatttgaaaccaaatgaaagtttagatgatactacataatatccaccaacctttta 799
Query: 600 cagatattaatat 612
|||||||||||||
Sbjct: 800 cagatattaatat 812
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 612
Length of database: 1012
Length adjustment: 10
Effective length of query: 602
Effective length of database: 1002
Effective search space: 603204
Effective search space used: 603204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
