NTTTTNAAACCCTATAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCGCGGAATTCACTACCAAGTGTGAAAAGGCAGCGACTTGCTCCCA
ACTCTACCAATATGGCTAGTTGCCCTTGCTATTTACACTTCTCAGCGTTA
GGCCTTATTTTGTTGATCAAAGTTTTTATTTTATTTTTTAATTTAATTTA
ATTTAATTTAATTTTCATTCTGAACACAGTTTCACCTCCCTCCTCTCCAC
CCAGTACCCACCCCCAACTTTCTCCTCTATCCCAATCCACTCCTCTTTCA
TTTCTCTTCAAAAAAGGAATGGCTTCTATGGCTGTCAACCAGTCACAGCG
TATCAATTTACAGTAAGAATAGGCACCTCCTCTTCTATTAATGTTAAAAA
AATCAGTAATCTTATTTTTTAAGTAATCTTAAATATAAAAAGTCCTTTCA
TGTAGTAAACTCTGCACCACCCACATTCTCACCAAAAGAAACTGAATAGA
GTACAGACTATTCCTAGAAACATGGAGAGAAAACAAGAATAGCAGACCCT
TTCTAATTTTTCCTCATCTTGTAAAAGAACAGCCTCTTGGGGCTGGGGAG
ATGAGCTTCCAATGGAGACTCTAGGAAAAATAGGAACCTTTCCTAAATGA
ATGGAGTCTGAAATGTTGGGGAACACTTGGGAACCCTATTTAAGTTCATG
CACAGCTGAGAACTGGTGCACAACAAGTACATAN

NGGAATGACTCAATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTGTTCAGAATTGCG
AGAAGTAAGTTTCTGTTGTTTCTGAGAGACCTATTTTGTGGTACTTTGTT
ACAGGTCTGCAAATAGATATGCCGGGGCCTAGCAAACACATAATTAGATG
CTCACAGTCAGCTATTGGATGGATCACAGGGCCCCCAATGGAGGAGCTAG
AGAAAGTATCCAAGGAGCTAAAGAGATCTGCAACCCTAAGGATGCAACAA
CATTATGAACTAACCAGTACTCCAGAGCTCTTAACTCTAGCTGCATATGT
ATCAAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGAGGCCCATTGGAC
AAGCAAACTTTATATGCCCCAGTATAGGGGAATGCCAGGGCCAAAAAGGG
GGAGTGGGTGGGTATGGGAGTGTAGGGGAGNNNNNNNNNNNNNNNNNNNN
TTTTTTNNTNTTTTTTTTTTTTTTTNNTTTNTTTTTTTTTTTTTTTTTTT
TTNNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTNTTNNTTTTTTNTTNTTTTTTTTTTTTTTTTTTTTTTTTNTTTTT
TTTTTTTTTTTTTTTTTNTTTTTTTTTTTTNTTTTNTTTTTTNTNTTTTT
TTTTTTTNTTTTTTTTTTTTNTTTTTTTTTTTTTTTTTNTTTTTTTTTTT
TN

Query= MSMg01no528_j11.b1 MSMg01no528_j11.b1 CHROMAT_FILE:
MSMg01no528_j11.b1 PHD_FILE: MSMg01no528_j11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:04:14 2005
         (679 letters)



>mm_chr12_45759047_45760125
          Length = 1079

 Score =  998 bits (516), Expect = 0.0
 Identities = 550/564 (97%), Gaps = 7/564 (1%)
 Strand = Plus / Minus

                                                                        
Query: 116  agtttttattttattttttaatttaatttaatttaatttaattttcattctgaacacagt 175
            ||||||||||||||||     |||||||||||||||||||||||||||||||||||||||
Sbjct: 1079 agtttttattttattt-----tttaatttaatttaatttaattttcattctgaacacagt 1025

                                                                        
Query: 176  ttcacctccctcctctccacccagtacccacccccaactttctcctctatcccaatccac 235
            |||||||||||||||||||||||||||||| ||||||||||| |||||| ||||||||||
Sbjct: 1024 ttcacctccctcctctccacccagtacccatccccaactttcccctctaccccaatccac 965

                                                                        
Query: 236  tcctctttcatttctcttcaaaaaaggaatggcttctatggctgtcaaccagtcacagcg 295
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 964  tcctctttcatttctcttcaaaaaaggaatggcttctatggctgtcaaccagtcacagca 905

                                                                        
Query: 296  tatcaatttacagtaagaataggcacctcctcttctattaatgttaaaaaaatcagtaat 355
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 904  tatcaatttacagtaagaataggcacctcctcttctattaatgttaaaaaaatcagtaat 845

                                                                        
Query: 356  cttattttttaagtaatcttaaatataaaaagtcctttcatgtagtaaactctgcaccac 415
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 844  cttattttttaagtaatcttaaatataaaaagtcctttcatgtagtaaactctgcaccac 785

                                                                        
Query: 416  ccacatt-ctcaccaaaagaaactgaatagagtacagactattcctagaaacatggagag 474
            ||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 784  ccacattcct-accaaaagaaactgaatagagtacagactattcctagaaacatggagag 726

                                                                        
Query: 475  aaaacaagaatagcagaccctttctaatttttcctcatcttgtaaaagaacagcctcttg 534
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725  aaaacaagaatagcagaccctttctaatttttcctcatcttgtaaaagaacagcctcttg 666

                                                                        
Query: 535  gggctggggagatgagcttccaatggagactctaggaaaaataggaacctttcctaaatg 594
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665  gggctggggagatgagcttccaatggagactctaggaaaaataggaacctttcctaaatg 606

                                                                        
Query: 595  aatggagtctgaaatgttggggaacacttgggaaccctatttaagttcatgcacagctga 654
            |||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 605  aatggaatctgaaatgttggggaacacttgggaatcctatttaagttcatgcacagctga 546

                                    
Query: 655  gaactggtgcacaacaagtacata 678
            |||||||||||||||| |||||||
Sbjct: 545  gaactggtgcacaacaggtacata 522


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 679
Length of database: 1079
Length adjustment: 10
Effective length of query: 669
Effective length of database: 1069
Effective search space:   715161
Effective search space used:   715161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)