Query= MSMg01no528_o03.b1 MSMg01no528_o03.b1 CHROMAT_FILE:
MSMg01no528_o03.b1 PHD_FILE: MSMg01no528_o03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:04:37 2005
(680 letters)
>mm_chr12_105498326_105499405
Length = 1080
Score = 727 bits (376), Expect = 0.0
Identities = 395/402 (98%), Gaps = 4/402 (0%)
Strand = Plus / Minus
Query: 281 atgtgaagcaaggcagtaagcagcagctctgcatggtcctgcacgggctcctgcctccag 340
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 1080 atgtgaagcaaggcagtaagcagcagctctgcatggtcctgcacaggctcctgcctccag 1021
Query: 341 gattctgccttgcttgtg--ttcctccctgatctccttcagtgatgaatgttgttgtaga 398
|||||||||||| || || |||||||||||| ||||||||||||||| |||||||||||
Sbjct: 1020 gattctgccttg-tt-tgccttcctccctgatttccttcagtgatgaacgttgttgtaga 963
Query: 399 agtataagcatcagcaaccctttccttcccaacttgcttattggtcatggtgtttcatca 458
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 962 agtataagcatcagcaaccctttccttcccaacttgcttattggtcatggtgtttcatca 903
Query: 459 tagcgatagaaaaatgaattaatgtctcctcataccctgtctatatgtctgtccactcct 518
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 902 tagcgatagaaaaatgaattaatgtctcctcataccctgtctatatgtctgtccactcct 843
Query: 519 acgatttaatttagtagctgcatcctctttgtatgtctccctcattggatcactagggcc 578
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 842 acgatttaatttagtagctgcatcctctttgtatgtctccctcattggatcactagggcc 783
Query: 579 tgctttctctctgtctggactcctggatcctattgaagaaaagtccggtggtttcctcag 638
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 782 tgctttctctctgtctggactcctggatcctattgaagaaaagtccggtggtttcctcag 723
Query: 639 ctttgttatacaggacacatcccatccctggcactaaccaaa 680
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 722 ctttgttatacaggacacatcccatccctggcactaaccaaa 681
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 680
Length of database: 1080
Length adjustment: 10
Effective length of query: 670
Effective length of database: 1070
Effective search space: 716900
Effective search space used: 716900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no528_o03.g1 MSMg01no528_o03.g1 CHROMAT_FILE:
MSMg01no528_o03.g1 PHD_FILE: MSMg01no528_o03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:04:37 2005
(613 letters)
>mm_chr12_105313086_105314098
Length = 1013
Score = 1185 bits (613), Expect = 0.0
Identities = 613/613 (100%)
Strand = Plus / Plus
Query: 1 cccaaacctcaaatctcccctttcactcaaagccctaggataaggtctaagatcatccca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cccaaacctcaaatctcccctttcactcaaagccctaggataaggtctaagatcatccca 260
Query: 61 gggcacaagagctgtgccaccctgaggctgagttatcaagctgatccccaggtacttatc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gggcacaagagctgtgccaccctgaggctgagttatcaagctgatccccaggtacttatc 320
Query: 121 ctgagataactggacagatctctcgaattgggagcttctccacagctctttgcccctcct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgagataactggacagatctctcgaattgggagcttctccacagctctttgcccctcct 380
Query: 181 aatcatcctgagctaggagacttggaggaagcttgtgcttcctgcctttgcataaggacc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatcatcctgagctaggagacttggaggaagcttgtgcttcctgcctttgcataaggacc 440
Query: 241 ctcttttggaagactctggggctacactttggagaaagctgatctggggcaagaatcaac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctcttttggaagactctggggctacactttggagaaagctgatctggggcaagaatcaac 500
Query: 301 tggatgcttcaggattctagcttccagtgatatgtcatggtcatggatacagcaaaatct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tggatgcttcaggattctagcttccagtgatatgtcatggtcatggatacagcaaaatct 560
Query: 361 aagcatctgattggaccctgggaagagtagctgcttctgggacctcatcccaccactgtc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aagcatctgattggaccctgggaagagtagctgcttctgggacctcatcccaccactgtc 620
Query: 421 cattcaccgtggcactagcctggactcctgggcagatggcttgttactccttgtgcttga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cattcaccgtggcactagcctggactcctgggcagatggcttgttactccttgtgcttga 680
Query: 481 ccccaccctcctgaccactcactgtactatggagcagctctgctgggtcttttcatgctt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ccccaccctcctgaccactcactgtactatggagcagctctgctgggtcttttcatgctt 740
Query: 541 tgctgcctctgctgggtgacttctctctaccagccttgtcctgacacactgtgagctaaa 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tgctgcctctgctgggtgacttctctctaccagccttgtcctgacacactgtgagctaaa 800
Query: 601 atgacactggtct 613
|||||||||||||
Sbjct: 801 atgacactggtct 813
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 613
Length of database: 1013
Length adjustment: 10
Effective length of query: 603
Effective length of database: 1003
Effective search space: 604809
Effective search space used: 604809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
