BAC Information

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BAC

Clone NameMSMg01-529N23
Chromosome12 (Build37)
Map Location 60,010,583 - 60,010,955
singlet/doubletsinglet
Overlap genenone
Upstream geneSstr1, Clec14a
Downstream geneLOC100040183, Sec23a, Sip1, Trappc6b, Pnn, EG544872, Mia2, Mgea6, Fbxo33, LOC665628, LOC238199, LOC665639, LOC665644
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-529N23.T7 (MSMg01no529_n23.b1)MSMg01-529N23.TJ (MSMg01no529_n23.g1)
ACCAG598648AG598649
length774789
length of high quality
(start - end)
373 (276 - 648)---
definitionCHROMAT_FILE: MSMg01no529_n23.b1 PHD_FILE: MSMg01no529_n23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:06:00 2005CHROMAT_FILE: MSMg01no529_n23.g1 PHD_FILE: MSMg01no529_n23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:06:00 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNCCCCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCCCATTTCTATTCTTGCTTTCTTGCATGGCTTTCCTGGTTATT
CCCGCATCAATCTGACCTCTCAACTATGTGAGTACATAGCTCATGCGTGG
GACTCTTCTTGTTCCTTCTCCATTGGTGAGCTCATCAATGCTCATGATTT
TAAATCGTGTAACGAATCTGGCAACATCCCAATTGTCTTTCTGGAACTGT
TCAAGGATGCCCAGACTTGTTTATTCATCTGCTTATCTGACAAATTACTT
GGCTGTCTAGTAAATCTTTTAATAAGCCTGCAACCAAACAATTTCTTAAG
AGTTTCCATGGCATTTATTTTTAATACAAAGTAGACAAAGAACTTATTTT
CTTGCCTGTGTGAGGTGCACAGTTTTGGTTGGACATGTGTACACTAACAT
GTACAGCTTCCTTTATCTTCCTCTTCAAAGAGTCATACCCACCTGTGTTT
CAGAGAGCGGCCTCTCCATCCTTCCTATTCCACTCAGATGTTCTGGAGTC
ATTCTTCACTTGATTATTTTTTCTAGTCACATCCAATTAACCATTANGTT
TTGACTTATTATGTCTTCGACTTATTATTGATGTATTAGGTTGAATAAGA
AAACAACACAGGATAGGGATGGTAAGCAACACATAATATGGATTTGAGGG
GCTCCTCAGCTCTGACATCTTCCTTCACGGTCTATATTTCGAAAGTTCTT
AGTCACTGTTCTATTGCTGTGGAA
NCACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTGCATCTTTAATCCCATGT
CCTGTCTAGATTTGCTCACTACAACCAACCTATCCTTGTCTGTTGATCTT
GCGAGTTCATGTGTGTGTGTGTGTGGGTGTGTGAGTGTGTGTGCGTATAC
TGGAACCTGCAACCCACACCTCATCCATGCTCCCTCTGTCATGTGCTCCA
CACAACGAACTCCACTCTATAACCCATCTCAAACTCTCTGATCTAGCTCT
ATAAACAAAGGACTCTAACGAAAGACATCTTCTCTGTCATGATTGACTGA
CTGCTGTCCTTTACTACCCCTGTAGTCTATATGCTCCATGTCCACCGTGA
CTATCCCAAAGATAGTTGTGCCTGCCTAACCCTATCTTGCGTATACTGCA
CACCGAACCATGTTTTTCAAAATCCAATTCGAAATCGTGCCGAATATGGA
CTCTGGTGCTCCCTGCTCTTGGAGAAGTAGCCCGAACACAGCAAGACAAA
CTCTCTCCCTAATGATTCCCCAATACTCTCAGCTCTAGCCTTGATATCTC
CAGAGTGACACGGATCTACTCAGAATGAAGTGTGGACTGAACTGTTTCGT
AGGAGCCAGTGTCTTTTAAGTTCAGTCCCACGCGTCTGAAGTCTCTAGAT
TTTTTCCCATCGTAATGAGACTGGATACATGGTATTTAAATGCTCGCGCC
CTACTTTTGGAAGATGATTTATCACGAATAATTAAGGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no529_n23.b1 MSMg01no529_n23.b1 CHROMAT_FILE:
MSMg01no529_n23.b1 PHD_FILE: MSMg01no529_n23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:06:00 2005
         (373 letters)



>mm_chr12_60010383_60011155
          Length = 773

 Score =  677 bits (350), Expect = 0.0
 Identities = 367/373 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   catctgcttatctgacaaattacttggctgtctagtaaatcttttaataagcctgcaacc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 catctgcttatctgacaaattacttggctgtctagtaaatcttttaataagcctgcaacc 514

                                                                       
Query: 61  aaacaatttcttaagagtttccatggcatttatttttaatacaaagtagacaaagaactt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 aaacaatttcttaagagtttccatggcatttatttttaatacaaagtagacaaagaactt 454

                                                                       
Query: 121 attttcttgcctgtgtgaggtgcacagttttggttggacatgtgtacactaacatgtaca 180
           ||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 453 attttcttgccggtgtgaggtgcacagttttggttggacatgtgtgcactaacatgtaca 394

                                                                       
Query: 181 gcttcctttatcttcctcttcaaagagtcatacccacctgtgtttcagagagcggcctct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 393 gcttcctttatcttcctcttcaaagagtcatacccacctgtgtttcagacagcggcctct 334

                                                                       
Query: 241 ccatccttcctattccactcagatgttctggagtcattcttcacttgattattttttcta 300
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 333 ccatccttcctattccactcagatgttctggagtcattcttgacttgattattttttcta 274

                                                                       
Query: 301 gtcacatccaattaaccattangttttgacttattatgtcttcgacttattattgatgta 360
           ||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct: 273 gtcacatccaattaaccattaggttttgacttattatgtctttgacttattattgatgta 214

                        
Query: 361 ttaggttgaataa 373
           |||||||||||||
Sbjct: 213 ttaggttgaataa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 373
Length of database: 773
Length adjustment: 9
Effective length of query: 364
Effective length of database: 764
Effective search space:   278096
Effective search space used:   278096
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)