NNNAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTTTGTTTATCTCTGTACCCCATTTTTAAAATAGGGTTAT
CAGATTCTGGAGTCCATCTTCTTGAGTTCTTTATATATACTGGATATTAG
TCCCCTATCTAATTTAGGATTCGTAAAGATCCTTTCCCAATCTGTTGGTG
GCCTTTTTGTCTTATTGACAGTGTCTTTTGCCTTACAGAAGCTTTGCAAT
TTTATGAGGTGCCATTTGTCAATTCTCAATCTTACAGCACAAGCCATTGC
TGTTCTATTCAGGAATTTTTCCCCTGTGCCCATATCTTTGAGGCTTTTCC
CCACTTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGGAGTTAC
TTGATCCACTTAGACTTGAGCTTTGTACAAGGATATAAGAATGGATCAAT
TTGCATTCTTCTGCATGATAACTGCCAGTTGAGCCAGCACCATTTGTTGA
AAATGCTGTCTTTTTTCCACTGGATGGTTTTAGCTCCTTTGTCAAAGATC
AAGGACCATAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCAT
TGGTCTACCTGTCTGTCTCTATACCAGTACCATGCAGTTTTTATCACAAT
TGCTCTGTAGTACAGCTTTAGGTCAGGCATGGTAATTCTACCAGCGGTTC
TTTTATCATTGAGAAGAGTTTTTGCTAGCCTAGGCTTTTTGTTATTCCAA

CTTCCGCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGAGGACACTTTCTTAAT
CAAGGCTGCAGGGTATATGCTGGTCCCAGGGGCACTGACAATTGTTTAGA
AGTATGATAGTAGCAGCTTTCTTTGTGTAAAGGACTGCCATAAAAACCAG
ACTCTACATTGTTACTAAGAGTGATAGGAATAGCAGAGCCTGGAACTCCA
GTCGTTTAACTAGAAGAGCTGTTGTTGATATAATGCCTATAACGTCTAGG
TCAGAGGGTCACTCTAAAAGTCTTAACAGGATTTTTTTTTCTATCAGCTA
AGTGTTTCTGGATGTGAGACAGCTAGACTGCTGACTCAGGTTGATGACTT
GTGTGATTCTATTTCTGAATATCTAGAAGTGAGCAGAAGTGTAGTATCAG
TTACCACAGTGGAAGATTTGTCACCCTTCCTCCAGTCTCAATATTTAGAG
TAAAGCCTATCACAAGGTAGGCCAAGTGCTAGTGGAAAAATAACCTTGTA
ATGACATCTGAAGTAGGTACCCAAATACAGACCATCCCTCCCAGTCCCTC
TCCACAGAAAGTTCATATCACAGAAGAAGAGGGTGGGGGAGTACATAGAG
TTTGTGAGAACTGTAAAATGTGTGTCCGACCCTTCTGATGCTGGTGCGTC
ATATATGTTGTTAAGGACTCCAGGTAGTATAGNGGGTGGCTAGAAGATAA
ATGAAGGGAGGTGAAC

Query= MSMg01no531_h04.g1 MSMg01no531_h04.g1 CHROMAT_FILE:
MSMg01no531_h04.g1 PHD_FILE: MSMg01no531_h04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:08:04 2005
         (580 letters)



>mm_chr12_99530240_99531223
          Length = 984

 Score = 1048 bits (542), Expect = 0.0
 Identities = 572/584 (97%), Gaps = 4/584 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   agaggacactttcttaatcaaggctgcagggtatatgctggtcccaggggcactgacaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 784 agaggacactttcttaatcaaggctgcagggtatatgctggtcccagggccactgacaat 725

                                                                       
Query: 61  tgtttagaagtatgatagtagcagctttctttgtgtaaaggactgccataaaaaccagac 120
           |||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct: 724 tgtttagaagtatgatagtagcagttttctttgtataaaggactgccataaaaaccagac 665

                                                                       
Query: 121 tctacattgttactaagagtgataggaatagcagagcctggaactccagtcgtttaacta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 tctacattgttactaagagtgataggaatagcagagcctggaactccagtcgtttaacta 605

                                                                       
Query: 181 gaagagctgttgttgatataatgcctataacgtctaggtcagagggtcactctaaaagtc 240
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 604 gaagagctgttgttgatataatgcctataacgtctaggtcagagtgtcactctaaaagtc 545

                                                                       
Query: 241 ttaacaggattttttt----ttctatcagctaagtgtttctggatgtgagacagctagac 296
           ||||||||||||||||    |||||||||||||||||||||||| |||||||||||||||
Sbjct: 544 ttaacaggattttttttttcttctatcagctaagtgtttctggacgtgagacagctagac 485

                                                                       
Query: 297 tgctgactcaggttgatgacttgtgtgattctatttctgaatatctagaagtgagcagaa 356
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 484 tgctgactcaggttgatgacgtgtgtgattctatttctgaatatctagaagtgagcagaa 425

                                                                       
Query: 357 gtgtagtatcagttaccacagtggaagatttgtcacccttcctccagtctcaatatttag 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 gtgtagtatcagttaccacagtggaagatttgtcacccttcctccagtctcaatatttag 365

                                                                       
Query: 417 agtaaagcctatcacaaggtaggccaagtgctagtggaaaaataaccttgtaatgacatc 476
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 agtaaagcctatcacaaggtaggccaagtgctagtggaaaaataaccttgtaatgacatc 305

                                                                       
Query: 477 tgaagtaggtacccaaatacagaccatccctcccagtccctctccacagaaagttcatat 536
           |||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||
Sbjct: 304 tgaagtaggtacccaaatacagaccatccctcccaacccctctccacagaaagttcatat 245

                                                       
Query: 537 cacagaagaagagggtgggggagtacatagagtttgtgagaact 580
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 cacagaagaagagggtgggggagtacatagagtttgtgagaact 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 580
Length of database: 984
Length adjustment: 10
Effective length of query: 570
Effective length of database: 974
Effective search space:   555180
Effective search space used:   555180
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)