BAC Information

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BAC

Clone NameMSMg01-531P08
Chromosome12 (Build37)
Map Location 53,529,649 - 53,530,179
singlet/doubletsinglet
Overlap genenone
Upstream geneScfd1, LOC100039578, Coch, Strn3, Ap4s1, Hectd1, EG544864, LOC100039476, Heatr5a, LOC676784, 6530401N04Rik, Gpr33, LOC100039627, Nubpl
Downstream geneArhgap5, Akap6, Npas3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-531P08.T7 (MSMg01no531_p08.b1)MSMg01-531P08.TJ (MSMg01no531_p08.g1)
ACCAG600232AG600233
length729743
length of high quality
(start - end)
531 (70 - 600)363 (85 - 447)
definitionCHROMAT_FILE: MSMg01no531_p08.b1 PHD_FILE: MSMg01no531_p08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:08:45 2005CHROMAT_FILE: MSMg01no531_p08.g1 PHD_FILE: MSMg01no531_p08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:08:45 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCTTTTTTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCCATTTCATGTTGGTTTTAATTTGTAGGGGTGTGAAATCC
CAGTCTCCCCATATTTTGACAAATCCCACTACCCATGCCAACATCTCAAG
TAAGGGCTTTTGCTGTTTGCTTACTTCATGGGAGCAGAGAAAGGTGATGA
GTTGCATGTGTGGGAAGTATAGAACGAGTGAGAACCACACTCATGGATGT
TGGGTGACCCGTAAACTATTTCTCTTGAAACAGGAACCAAGTGCTGGAGT
GGCTGCCTTCTCTCTCCACCTCAGTCCTGGGAAAGTTCAGCTAGCCAGAT
GTGGGGGAGAGCTTCGTCACCTGGTCTCCACTAACCTTCCATCATGGTTA
GAAGCATCTTTTCATATGGGCCAGACATGGCTTTGCTTCAACCCATCTCG
TTATCCTTTCTCATTCTTTTTGATGCCTCATGTAACTTTGACTGCCATGA
AAGACAGAAAGGGTTTGCTGAGAAAAGCCCCCACATGAAAAATGTGTTGA
ATGATTCCTCTGATTTCTCAGAGACACTTACGGCAGGCCGTGTCAACTGT
GAGATCTGTTGTTGTCCTCCGTGAATCCCAGGTGCTGTAGGTATAATAGC
TCTTGAAAAATATTTGCTATCTTGAATCCCAAGCAGTAATTAATTAGCAC
CAATAAATATGATAAGAAATTATGATATA
TTTACACTCTTTGCCATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGATCTTTCCAGAAC
TTTTATCATGAATGGGTGTTGGATCTTGTCAAATGCTTTTTCTGCATCTA
ACGAGATGATCATGTGGTTTTTGTCTTTGAGTTTGTTTATATAATGGATT
ACATTGATGGATTTTTGTATATTAAACCATCCCTGCATCCCTGGAATAAA
ACCTACTTGGTCAGGATGGATGATTGCTTTAATGTGTTCTTGGATTCTTG
CAAATTCATCTGGAATAACAAAAAACCTAGGATAGCAAAAACTCTTCTCA
AGGATAAAAGAACCTCTGGTGGAATCACCATGCCTGACCTAAAGCTTTAC
TACAGAGCAATTGTGATAAAAACTGCATGGTACTGGTATAGTGACAGAAT
AGTAGACCAATGGAATAGAATTGAAGACCCATAAATGAACCCACACACCT
ATGGTCACTTGATCTTCGACAAGGGAGCTAAAACCATCCAGTGGAAGAAA
GACAGCATTTTCAACAATTGGTGCTGGCACAACTGGTTGTTATCATGTAC
AAGAATGCTAATCGATCCATACTTATCTCCTTGTACTAAGGGCAAATCTA
AGTGGATCAAGGAACTTCACTTAAAACCAGATACTCTGAAACTTTATAGA
GGAGAAAGTGGGGAAAAGCCTTGAAGATATGGGCACACGCGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no531_p08.b1 MSMg01no531_p08.b1 CHROMAT_FILE:
MSMg01no531_p08.b1 PHD_FILE: MSMg01no531_p08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:08:45 2005
         (531 letters)



>mm_chr12_53529449_53530379
          Length = 931

 Score = 1004 bits (519), Expect = 0.0
 Identities = 528/531 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gttggttttaatttgtaggggtgtgaaatcccagtctccccatattttgacaaatcccac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 gttggttttaatttgtaggggtgtgaaatcccagtctccccatattttgacaaatcccac 672

                                                                       
Query: 61  tacccatgccaacatctcaagtaagggcttttgctgtttgcttacttcatgggagcagag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 tacccatgccaacatctcaagtaagggcttttgctgtttgcttacttcatgggagcagag 612

                                                                       
Query: 121 aaaggtgatgagttgcatgtgtgggaagtatagaacgagtgagaaccacactcatggatg 180
           |||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 611 aaaggtgatgagctgcatgtgtgggaagtatagaacgagtgagaaccaccctcatggatg 552

                                                                       
Query: 181 ttgggtgacccgtaaactatttctcttgaaacaggaaccaagtgctggagtggctgcctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 ttgggtgacccgtaaactatttctcttgaaacaggaaccaagtgctggagtggctgcctt 492

                                                                       
Query: 241 ctctctccacctcagtcctgggaaagttcagctagccagatgtgggggagagcttcgtca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 ctctctccacctcagtcctgggaaagttcagctagccagatgtgggggagagcttcgtca 432

                                                                       
Query: 301 cctggtctccactaaccttccatcatggttagaagcatcttttcatatgggccagacatg 360
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 cctggtctccacaaaccttccatcatggttagaagcatcttttcatatgggccagacatg 372

                                                                       
Query: 361 gctttgcttcaacccatctcgttatcctttctcattctttttgatgcctcatgtaacttt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 gctttgcttcaacccatctcgttatcctttctcattctttttgatgcctcatgtaacttt 312

                                                                       
Query: 421 gactgccatgaaagacagaaagggtttgctgagaaaagcccccacatgaaaaatgtgttg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 gactgccatgaaagacagaaagggtttgctgagaaaagcccccacatgaaaaatgtgttg 252

                                                              
Query: 481 aatgattcctctgatttctcagagacacttacggcaggccgtgtcaactgt 531
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 aatgattcctctgatttctcagagacacttacggcaggccgtgtcaactgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 531
Length of database: 931
Length adjustment: 10
Effective length of query: 521
Effective length of database: 921
Effective search space:   479841
Effective search space used:   479841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)