NNNAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTCCCTAACCTACTCCAAGAACACATCAAAAAAATCAGCC
ATCCTGACCAAGTAGGTTTGATTCCAGGGATCCAGGTATGGTTCAATATA
CAGAAATCCATCAACATAATCCACTATAGAAACAAACTGAAAGAGAACTC
CTAAACTTGATAAACAGCTTCAGTGAAGTAGCTGGATATAAAATTAACTC
AACCAAGTCAATGCCCTTTCTCTATACAAAGGATAAACAGGGTGAGAGAG
AAATTAGGGAAACAACACCCTTCTCAATAGTCACAAATAATATAAAATAC
CTTGGCGTGACTCTAACTAAGGAAGTGAAAGATCTGTATGATAAGAACTT
CAAGTCTCTGAAGAAAGAAATTAAAGAAGATCTCAGAAGATGAAAAGATC
TCCCATGCTCATGGATTAGCATGATCAATATAGTAAAAATGGCTATCTTG
CCAAAAGCAATCTACAGATTCAATGCAATCCCCATCAAAATTCCAAATCA
ATTCTCCAATGAATTAGAAAGGGCAATCTGCAAATTCATCTGGAATATTT
AAAAACCTGGGATAGCAAAAACTCTTCTCAAGGATAAAAGAACCTCTGGT
GGAATCACCATGCCTGACCTAAAGCTGTATTACAGAGCAATTGTTATAAA
AATGGCATGTTACTGGTATAGCAACAGACAAGTAGACCAGTGGTATAGAA
TTGAN

NCCGCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTCCTGGTACTGTAAACCT
AGCTAACTACCAGTGGCTAAAATGTCACTGACTCTGGAGGAGAGCATACA
AATGCCTTTTTTCTGAAACAGTAATTTATTATCTTAATGATAACTTGTTT
GATATGATGAAATATAAAGCCAGTACAGTTTTAATTTGCATTTCCATAAT
GGCTAATAATTAAATTTTAATATGCTTATTAGACACGTCTATCAGATATA
TATTAATAAGCACATAAAAGAAGATGACATATTGTTTTCATCTTTTGGGA
ATTATTTGTTTATTTCATTAGCCAATTTATGGGATTTTGTGGAGTTTAGG
GACTGTCTTTTGTTTGTTTATCTTTAATTCTTTATTCTAAATGTTAATTT
TCTCTCAGGCGTGAGATGGAAAATGGAAAATGGAAAATTTTCCCTACTCT
ATAGGTTGAAGTTTTACTTCTAATGCAGAAAAGGAGCTCTTTAATTGCAT
GGAACTTCATTTGTGAATTCTTGGCATTTTTTTTTTCTGAGCTGCTGGAA
TTCTTTTGAGATCCTGTATATATTCCTGTATCTTGAAGTACTTTCATGTT
GTTTTCCTGTAAGTAATTCAGTGCTTTCCAACCTTACATTATTTTTTTAA
TTCATTTTTTGTACAGGATGAAGGATAAATATCTAGTTTCATATTATATA
TATATATATTC

Query= MSMg01no532_l18.g1 MSMg01no532_l18.g1 CHROMAT_FILE:
MSMg01no532_l18.g1 PHD_FILE: MSMg01no532_l18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:09:44 2005
         (656 letters)



>mm_chr12_64954103_64955158
          Length = 1056

 Score = 1170 bits (605), Expect = 0.0
 Identities = 647/667 (97%), Gaps = 13/667 (1%)
 Strand = Plus / Minus

                                                                        
Query: 1    attcctggtactgtaaacctagctaactaccagtggctaaaatgtcactgactctggagg 60
            |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 1031 attcctggtactgtaaacctagctaactaccagtggctaaaatgtcactgaccctggagg 972

                                                                        
Query: 61   agagcatacaaatgccttttttctgaaacagtaatttattatcttaatgataacttgttt 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 971  agagcatacaaatgccttttttctgaaacagtaatttattatcttaatgataacttgttt 912

                                                                        
Query: 121  gatatgatgaaatataaagccagtacagttttaatttgcatttccataatggctaataat 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 911  gatatgatgaaatataaagccagtacagttttaatttgcatttccataatggctaataat 852

                                                                        
Query: 181  taaattttaatatgcttattagacacgtctatcagatatatattaataagcacataaaag 240
            ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 851  taaattttaatatgcttattagacatgtctatcagatatatattaataagcacataaaag 792

                                                                        
Query: 241  aagatgacatattgttttcatcttttgggaattatttgtttatttcattagccaatttat 300
            ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 791  aagataacatattgttttcatcttttgggaattatttgtttatttcattagccaatttat 732

                                                                        
Query: 301  gggattttgtggagtttagggactgtcttttgtttgtttatctttaattctttattctaa 360
            ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731  gggatgttgtggagtttagggactgtcttttgtttgtttatctttaattctttattctaa 672

                                                                        
Query: 361  atgttaa-ttttctctcaggcgtgagatggaaaatggaaaatggaaaattttccctactc 419
            ||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 671  atgttaatttttttctcaggcgtgagatggaaaatggaaaatggaaaattttccctacta 612

                                                                        
Query: 420  tataggttgaagttttacttctaatgcagaaaaggagctctttaattgcatggaacttca 479
            |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 611  tataggttgaagttttacttctaatgcagaaaaggagctctttaattgcatgaaacttca 552

                                                                        
Query: 480  tttgtgaattcttggcattttttttttctgagctgctggaattcttttgagatcctgtat 539
            |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 551  tttgtgaattcttggca--ttttttttctgagctgctggaattcttttgagatcctgtat 494

                                                                        
Query: 540  atattcctgtatcttgaagtactttcatgttgttttcctgtaagtaattcagtgctttcc 599
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493  atattcctgtatcttgaagtactttcatgttgttttcctgtaagtaattcagtgctttcc 434

                                                                        
Query: 600  aaccttacatt-att---------tttttaattcattttttgtacaggatgaaggataaa 649
            ||||||||||| |||         ||||||||||||||||||||||||||||||||||||
Sbjct: 433  aaccttacattaattttttttaaatttttaattcattttttgtacaggatgaaggataaa 374

                   
Query: 650  tatctag 656
            |||||||
Sbjct: 373  tatctag 367


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 656
Length of database: 1056
Length adjustment: 10
Effective length of query: 646
Effective length of database: 1046
Effective search space:   675716
Effective search space used:   675716
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)