BAC Information

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BAC

Clone NameMSMg01-532O18
Chromosome12 (Build37)
Map Location 90,774,221 - 90,933,625
singlet/doubletdoublet
Overlap geneNrxn3
Upstream geneLOC100039261, EG666915
Downstream geneLOC100039498, LOC100039287
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-532O18.T7 (MSMg01no532_o18.b1)MSMg01-532O18.TJ (MSMg01no532_o18.g1)
ACCAG600966AG600967
length756766
length of high quality
(start - end)		665 (51 - 715)640 (83 - 722)
definitionCHROMAT_FILE: MSMg01no532_o18.b1 PHD_FILE: MSMg01no532_o18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:09:59 2005CHROMAT_FILE: MSMg01no532_o18.g1 PHD_FILE: MSMg01no532_o18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:09:59 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(90,932,965 - 90,933,625)(90,774,221 - 90,774,860)
sequence
NNNCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCAACCAAAGAATTCAAACACTGGCAAAGAAATCTTTCAAGT
TTTCCGACCACTGTAAGTATATTTAAATTCAAACGTGTATGAAGTTCTCT
TCTATGTAGAGTACTGCGAACCTGGGAGTTCTATGTGACGAGTAGAATAG
ACTCAGCAGGCTTTGTCCTCCAGGGACTTAAAGCTGAGGATGGTAAGAAA
CTCCTCCAAGACAATTCAGAAGAGGAACAGAACTACATTTGCATGAAAAC
ACACATTGTACTGTAATAAAGAGACGGATGAATAGATGGGATTCTTCTAC
TAAATCTCATCTACATTCAAGAGTCTAATTTACTTACATGTCTTAGTGAT
AGCTCTACTTATCAACACATTTGTCTAAGCTAATTTCCTTTCTCTTCCAT
CTCAGCCTTCTGTAGGTTTTATCATCTGCTATGCCCTGACAATTGTTCCT
TTCTCACCTCAGTGGTCACTTCCTTAGTGTCAATATTCATCCTAAAATCA
AGGACAGGCTTGACAGCCACCACAGTTCTTATCACTGGTTTAACACATTG
CTGCCAGAATTGTCCTTCTATATCATGAATCTGGTCATAACATGGTTCTA
ATAATTCGTAAATAGTATCAAGTTCTTTTGAAACTGCTTACCCTGGCCTG
CAAGCTATGTCTTGGGTTGACAACAACAGCTACTTTTGTGCCACAGCTCA
GTCTGA

NNNCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGGATATGAAATTCAAT
GACAAAAAACACTTGATAAAGGAGTGAGTTTGTATCTGATATATTATTTT
CCATGAGCCTTGATGAAACAGATTGATCCTTAATTAATGGAAAAGAAAGC
ATGTCTGTTTATTACTGTATGCTTGAGGATAGCAACTTGATCCACAGGGA
GATGGCTAAGTTTCATATTTCCTAAAATAGATATGTATCTGATAATATCC
GAGTGACTTTTAAAGCTTTATATAAAAGAATAAATGTCTGAGTTTTGGGT
CATTTATTGTAATGTCGGTTCTAACAGTAATGAACTCTGTATATTCATCA
AAGTTGTTTTTACTGTATAATTTTGCGATGCTGCCACATTGATACTGCTT
CCAGAAGTATGATGTACATTTAAACCCTTGATTTCTGGTTTGATAGAGCA
AGCCTCAGTGGCTTTCATTTTCATCCCATTATCCTTTGTGTTTGCATGTT
GGGTTGATGAGTGTGGTGGCGTGAATATCAACTCATAACGATTTGAGCAT
TGTTAAGGTGTGACACATTTTCAGAAGCTGATTGCCGTGTGTAAGAGTGA
CTCCCTCGTGTGGGACAGAAAAAGAAATCACATGATGAGAAATTCACGTA
TAATTGATTTACCAACAGCTACACACAGCTTAAGATATGACCTTCCACTG
CTTTATGTAAAGGTAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no532_o18.b1 MSMg01no532_o18.b1 CHROMAT_FILE:
MSMg01no532_o18.b1 PHD_FILE: MSMg01no532_o18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:09:59 2005
         (665 letters)



>mm_chr12_90932761_90933825
          Length = 1065

 Score = 1270 bits (657), Expect = 0.0
 Identities = 660/661 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaaccaaagaattcaaacactggcaaagaaatctttcaagttttccgaccactgt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 865 gaattcaaccaaagaattcaaacactggcaaagaaatctttcaagttttccgaccactgt 806

                                                                       
Query: 65  aagtatatttaaattcaaacgtgtatgaagttctcttctatgtagagtactgcgaacctg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 aagtatatttaaattcaaacgtgtatgaagttctcttctatgtagagtactgcgaacctg 746

                                                                       
Query: 125 ggagttctatgtgacgagtagaatagactcagcaggctttgtcctccagggacttaaagc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ggagttctatgtgacgagtagaatagactcagcaggctttgtcctccagggacttaaagc 686

                                                                       
Query: 185 tgaggatggtaagaaactcctccaagacaattcagaagaggaacagaactacatttgcat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tgaggatggtaagaaactcctccaagacaattcagaagaggaacagaactacatttgcat 626

                                                                       
Query: 245 gaaaacacacattgtactgtaataaagagacggatgaatagatgggattcttctactaaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gaaaacacacattgtactgtaataaagagacggatgaatagatgggattcttctactaaa 566

                                                                       
Query: 305 tctcatctacattcaagagtctaatttacttacatgtcttagtgatagctctacttatca 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tctcatctacattcaagagtctaatttacttacatgtcttagtgatagctctacttatca 506

                                                                       
Query: 365 acacatttgtctaagctaatttcctttctcttccatctcagccttctgtaggttttatca 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 acacatttgtctaagctaatttcctttctcttccatctcagccttctgtaggttttatca 446

                                                                       
Query: 425 tctgctatgccctgacaattgttcctttctcacctcagtggtcacttccttagtgtcaat 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tctgctatgccctgacaattgttcctttctcacctcagtggtcacttccttagtgtcaat 386

                                                                       
Query: 485 attcatcctaaaatcaaggacaggcttgacagccaccacagttcttatcactggtttaac 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 attcatcctaaaatcaaggacaggcttgacagccaccacagttcttatcactggtttaac 326

                                                                       
Query: 545 acattgctgccagaattgtccttctatatcatgaatctggtcataacatggttctaataa 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 acattgctgccagaattgtccttctatatcatgaatctggtcataacatggttctaataa 266

                                                                       
Query: 605 ttcgtaaatagtatcaagttcttttgaaactgcttaccctggcctgcaagctatgtcttg 664
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttcgtaaatagtatcaaattcttttgaaactgcttaccctggcctgcaagctatgtcttg 206

            
Query: 665 g 665
           |
Sbjct: 205 g 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 665
Length of database: 1065
Length adjustment: 10
Effective length of query: 655
Effective length of database: 1055
Effective search space:   691025
Effective search space used:   691025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no532_o18.g1 MSMg01no532_o18.g1 CHROMAT_FILE:
MSMg01no532_o18.g1 PHD_FILE: MSMg01no532_o18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:09:59 2005
         (640 letters)



>mm_chr12_90774021_90775060
          Length = 1040

 Score = 1199 bits (620), Expect = 0.0
 Identities = 635/640 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctggatatgaaattcaatgacaaaaaacacttgataaaggagtgagtttgtatctgatat 60
           ||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 201 ctggatatgaaatccaatgacaaaaaacacttgataaaggagtgagtttgcatctgatat 260

                                                                       
Query: 61  attattttccatgagccttgatgaaacagattgatccttaattaatggaaaagaaagcat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attattttccatgagccttgatgaaacagattgatccttaattaatggaaaagaaagcat 320

                                                                       
Query: 121 gtctgtttattactgtatgcttgaggatagcaacttgatccacagggagatggctaagtt 180
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtcagtttattactgtatgcttgaggatagcaacttgatccacagggagatggctaagtt 380

                                                                       
Query: 181 tcatatttcctaaaatagatatgtatctgataatatccgagtgacttttaaagctttata 240
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 381 tcatatttcctaaaatagatatgtatctgataatatccaagtgacttttaaagctttata 440

                                                                       
Query: 241 taaaagaataaatgtctgagttttgggtcatttattgtaatgtcggttctaacagtaatg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taaaagaataaatgtctgagttttgggtcatttattgtaatgtcggttctaacagtaatg 500

                                                                       
Query: 301 aactctgtatattcatcaaagttgtttttactgtataattttgcgatgctgccacattga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aactctgtatattcatcaaagttgtttttactgtataattttgcgatgctgccacattga 560

                                                                       
Query: 361 tactgcttccagaagtatgatgtacatttaaacccttgatttctggtttgatagagcaag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tactgcttccagaagtatgatgtacatttaaacccttgatttctggtttgatagagcaag 620

                                                                       
Query: 421 cctcagtggctttcattttcatcccattatcctttgtgtttgcatgttgggttgatgagt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cctcagtggctttcattttcatcccattatcctttgtgtttgcatgttgggttgatgagt 680

                                                                       
Query: 481 gtggtggcgtgaatatcaactcataacgatttgagcattgttaaggtgtgacacattttc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gtggtggcgtgaatatcaactcataacgatttgagcattgttaaggtgtgacacattttc 740

                                                                       
Query: 541 agaagctgattgccgtgtgtaagagtgactccctcgtgtgggacagaaaaagaaatcaca 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 agaagctgattgccgtgtgtaagagtgactccctcgtgtgggacagaaaaagaaatcaca 800

                                                   
Query: 601 tgatgagaaattcacgtataattgatttaccaacagctac 640
           |||||||||||||| |||||||||||||||||||||||||
Sbjct: 801 tgatgagaaattcaggtataattgatttaccaacagctac 840


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 640
Length of database: 1040
Length adjustment: 10
Effective length of query: 630
Effective length of database: 1030
Effective search space:   648900
Effective search space used:   648900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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