BAC Information

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BAC

Clone NameMSMg01-532O24
Chromosome12 (Build37)
Map Location 16,840,291 - 16,987,226
singlet/doubletdoublet
Overlap geneRock2
Upstream geneEG432636, LOC100043273, Lpin1, Ntsr2, Greb1, E2f6
Downstream genePqlc3, 2410004P03Rik, EG668514, Kcnf1, LOC100043299, Pdia6, Atp6v1c2, Nol10, LOC672501, Odc1, LOC100042522, LOC100042528, Hpcal1, EG668525, LOC673341
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-532O24.T7 (MSMg01no532_o24.b1)MSMg01-532O24.TJ (MSMg01no532_o24.g1)
ACCAG600978AG600979
length753766
length of high quality
(start - end)		596 (53 - 648)513 (85 - 597)
definitionCHROMAT_FILE: MSMg01no532_o24.b1 PHD_FILE: MSMg01no532_o24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:10:00 2005CHROMAT_FILE: MSMg01no532_o24.g1 PHD_FILE: MSMg01no532_o24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:10:00 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(16,986,663 - 16,987,226)(16,840,291 - 16,840,803)
sequence
NGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCATTTTTTCTTCTCTACATTTTATTTCACTGTCAGTACT
TGATTTAAATGTTAGTAAGTCACAATCATGTCAATTTTTTTTTTTTTTTT
TTTTTTAGCAAAGTCTACCTATCCCTTTTTAGTTGGACTTAGGCTTCATC
TCCACATCACATTACCATTTTCTACTGGCACATCTTCTCCCAGCTTCCAC
ACAGCATAACATTACAAAAAAAAACTAAGATTTTTAATTTAATTCCTCAA
TAAGGTTGAGTCTTTGTTTCTTTTTTTAAAGACAGGGTCTCACTATGTAG
CCCTGCTTGGCCTGGAGCTCACTATACATACCTTGAACTTACAGAGATCT
GCCTGCCTCTGCCTCTCAAGTGCTAGAATTAAAGGCACGCACTGCTTCAC
TAAGAAAACATTCTAAAAGTACCACTTTCAAGCCCATTTTTTAAGCCAAC
AATTTCTGCTCTCCTCTTCTTCTTCCTCCTCCTTCTCATCTTCCTCTTCC
TCCAGTGGAATTTACAGCTAAGAGTGCAGGTTCTGAAACCTGGTCCTGCT
GCATATGACTGTGACCTTTGGCAGATAATCTTTATGTGCCTTTGGGAGGC
AGAAGCAGGCAGATCTTTGGACATTTCTGTAGGATCTATTTGTTAAAACT
AAAATTTCAGATATTTACAAATGGGCTTCAGTGTCTCTCTATTTTAAGGA
ATT

NNNAAGTTTCCCATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTGTACAGTGCCCTAG
GTTTGATCCTTGGTACCACATAAATGGCACGGTGGGTCATCCCTGTAATC
CCAGCAAGACAGGAGGCTCAGAATTTGATGGTTGGACTGGGAGATGGCTC
AGTAGAAACAGCACTTACCTCACAAGTGTGAAGACCAGATCTCAGCTCTC
CAGAGCCCACGTCATAAAGAGGATAAAGCAGTGGAGTGTCCATCTGTAAC
CAACCCCAGTGCACCTACAGCAAGAAGGGAGCCCGAGACAGGAGACTCCC
CTAAAGCTTGTAGGCCAGCAAACCTGGCATACACAGTGGTGGACAGCAGA
AGACCCTGCATCAAACAAGGGGGGAGGTAAGGGCCAACCTACAGCCAAGG
TTGACCTCTGACTCATGCCTGCACTTCCACTACACACACCTACTAAGGTT
CACCATTCAGAGTTGGCATCCCTCGCCCACATTCCTCCGCGTCCAGGCCT
GGCCCTCTAGTCCTCCTCAGGATTGTTTAACTGCTGACTACAGTGTACAA
GCAGAAGATCATGAGAATGTGACGATGGGAGACTGATCAATAAGCTTTCA
GATTTCCTTTGTGAGTGAGGATTTGCTTCCGTCTTTTTCCTAACCACGAG
CCCATGAGCTGAGAAAGCTGGGGAGTCAGGACTTGAACCCTGGAGAACAN
NCGGGGCAGCCAGTGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no532_o24.b1 MSMg01no532_o24.b1 CHROMAT_FILE:
MSMg01no532_o24.b1 PHD_FILE: MSMg01no532_o24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:10:00 2005
         (596 letters)



>mm_chr12_16986663_16987658
          Length = 996

 Score = 1091 bits (564), Expect = 0.0
 Identities = 564/564 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcattttttcttctctacattttatttcactgtcagtacttgatttaaatgttagt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gaattcattttttcttctctacattttatttcactgtcagtacttgatttaaatgttagt 505

                                                                       
Query: 65  aagtcacaatcatgtcaattttttttttttttttttttttagcaaagtctacctatccct 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 aagtcacaatcatgtcaattttttttttttttttttttttagcaaagtctacctatccct 445

                                                                       
Query: 125 ttttagttggacttaggcttcatctccacatcacattaccattttctactggcacatctt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ttttagttggacttaggcttcatctccacatcacattaccattttctactggcacatctt 385

                                                                       
Query: 185 ctcccagcttccacacagcataacattacaaaaaaaaactaagatttttaatttaattcc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ctcccagcttccacacagcataacattacaaaaaaaaactaagatttttaatttaattcc 325

                                                                       
Query: 245 tcaataaggttgagtctttgtttctttttttaaagacagggtctcactatgtagccctgc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tcaataaggttgagtctttgtttctttttttaaagacagggtctcactatgtagccctgc 265

                                                                       
Query: 305 ttggcctggagctcactatacataccttgaacttacagagatctgcctgcctctgcctct 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ttggcctggagctcactatacataccttgaacttacagagatctgcctgcctctgcctct 205

                                                                       
Query: 365 caagtgctagaattaaaggcacgcactgcttcactaagaaaacattctaaaagtaccact 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 caagtgctagaattaaaggcacgcactgcttcactaagaaaacattctaaaagtaccact 145

                                                                       
Query: 425 ttcaagcccattttttaagccaacaatttctgctctcctcttcttcttcctcctccttct 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144 ttcaagcccattttttaagccaacaatttctgctctcctcttcttcttcctcctccttct 85

                                                                       
Query: 485 catcttcctcttcctccagtggaatttacagctaagagtgcaggttctgaaacctggtcc 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84  catcttcctcttcctccagtggaatttacagctaagagtgcaggttctgaaacctggtcc 25

                                   
Query: 545 tgctgcatatgactgtgacctttg 568
           ||||||||||||||||||||||||
Sbjct: 24  tgctgcatatgactgtgacctttg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 596
Length of database: 996
Length adjustment: 10
Effective length of query: 586
Effective length of database: 986
Effective search space:   577796
Effective search space used:   577796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no532_o24.g1 MSMg01no532_o24.g1 CHROMAT_FILE:
MSMg01no532_o24.g1 PHD_FILE: MSMg01no532_o24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:10:00 2005
         (513 letters)



>mm_chr12_16840091_16841003
          Length = 913

 Score =  992 bits (513), Expect = 0.0
 Identities = 513/513 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgtacagtgccctaggtttgatccttggtaccacataaatggcacggtgggtcatccct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgtacagtgccctaggtttgatccttggtaccacataaatggcacggtgggtcatccct 260

                                                                       
Query: 61  gtaatcccagcaagacaggaggctcagaatttgatggttggactgggagatggctcagta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtaatcccagcaagacaggaggctcagaatttgatggttggactgggagatggctcagta 320

                                                                       
Query: 121 gaaacagcacttacctcacaagtgtgaagaccagatctcagctctccagagcccacgtca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaaacagcacttacctcacaagtgtgaagaccagatctcagctctccagagcccacgtca 380

                                                                       
Query: 181 taaagaggataaagcagtggagtgtccatctgtaaccaaccccagtgcacctacagcaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taaagaggataaagcagtggagtgtccatctgtaaccaaccccagtgcacctacagcaag 440

                                                                       
Query: 241 aagggagcccgagacaggagactcccctaaagcttgtaggccagcaaacctggcatacac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aagggagcccgagacaggagactcccctaaagcttgtaggccagcaaacctggcatacac 500

                                                                       
Query: 301 agtggtggacagcagaagaccctgcatcaaacaaggggggaggtaagggccaacctacag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agtggtggacagcagaagaccctgcatcaaacaaggggggaggtaagggccaacctacag 560

                                                                       
Query: 361 ccaaggttgacctctgactcatgcctgcacttccactacacacacctactaaggttcacc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccaaggttgacctctgactcatgcctgcacttccactacacacacctactaaggttcacc 620

                                                                       
Query: 421 attcagagttggcatccctcgcccacattcctccgcgtccaggcctggccctctagtcct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 attcagagttggcatccctcgcccacattcctccgcgtccaggcctggccctctagtcct 680

                                            
Query: 481 cctcaggattgtttaactgctgactacagtgta 513
           |||||||||||||||||||||||||||||||||
Sbjct: 681 cctcaggattgtttaactgctgactacagtgta 713


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 513
Length of database: 913
Length adjustment: 10
Effective length of query: 503
Effective length of database: 903
Effective search space:   454209
Effective search space used:   454209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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