BAC Information

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BAC

Clone NameMSMg01-533E19
Chromosome12 (Build37)
Map Location 32,551,971 - 32,552,535
singlet/doubletsinglet
Overlap genenone
Upstream geneAcp1, Sh3yl1, LOC629656, 9030611O19Rik, LOC668781, LOC100043065, LOC100043514, EG629667, LOC100043068, Lamb1-1, Dld, LOC668786, Slc26a3, Cbll1, Slc26a4, LOC100043531, Bcap29, Dus4l, LOC100043081, Gpr22
Downstream geneHbp1, Prkar2b, Pik3cg, 2010109K11Rik, LOC100043548, Pbef1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-533E19.T7 (MSMg01no533_e19.b1)MSMg01-533E19.TJ (MSMg01no533_e19.g1)
ACCAG601255AG601256
length727759
length of high quality
(start - end)
633 (70 - 702)575 (74 - 648)
definitionCHROMAT_FILE: MSMg01no533_e19.b1 PHD_FILE: MSMg01no533_e19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:10:28 2005CHROMAT_FILE: MSMg01no533_e19.g1 PHD_FILE: MSMg01no533_e19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:10:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCCCCCCCTTNTTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXCGCNGGTAATTCTTCTGTCTTTCCTAAAACAAAACAAAA
CAAAACAAAACAAAACAAAACAAAACAAAACAAAACAAAACAAAACAAAA
CAAAACAATAGAAGCGTTTTAGGACACCTGACTCAGCGAGCCCAGTGTCT
AGCTTTGTGGGTGCAGTGTATCCACATGCAGTTTCACCCCGTAATCAATG
TCATGCTCATTTGTACCTCAATTCACTGCAGCTACTAACCGTTCCTCTCT
GTGGATTTCTCTATTCTGGATTCCTCATGTAAATATAATATCTTATTGTA
TAGCCTCTTATGCCTGCCTTCTTACCTTACAATGCTTTCAGGATTCTTCC
ATGATATACCATGTTTTAGAACTTCATGTTAAATGCCAAGTAATGTTGGC
TGTGTACATCTTCACTTTATAAGTTGGTTGACATTTGGTTGTTTAACTTT
AGGCTATCATATGATAGACACTGCTGTGAACAATAGATTGTGTGTACATT
ACATCTAAGTGAATATGCATTATCATTTCTCTTGTATAAACTGGGGCTTT
AATTACTAGGTTACTAAGTTAAATTCAGATTTGATTTTCACAAATTCCTG
GAATATCCTCAAAGTGGCTACAGTGTCTTATACTCCCAAGAGCAGTTTGG
AGCATCATTTTCTTCAGACCAATATTC
ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCTAATTCTCCTGCTTCTCCCTCCTCAG
AGCTGGACTCACAGGCACGTGCCGTCACACCGGGTTGCTATGGTGCCTGG
GATTGATTCTAGGGCCTCCTGCATACTGGGCAAGCACTCTACCAACTGAG
CTGCACTCTTAGCCCCTTAAAGAGTAATTTAAAAATATTAATAACATTCA
TGAATACATATCTTAATTATTTTTTATTTATTATTGGGGACGCTTTTAAC
TATCGGTTTTTTTGATGGAAGGACTTGAAGAGTACTTACTGAATTGACCT
TGAGAATGTTAAATGCTTTATCTTTTAAAAGATTTATTTTATGTACGTGA
GTACACCGTAGTTGACCTTCAGACACACCAGAAGAGGGCATCAGATTCCA
TTACAGATGGTTGTGAGCTGCCATTTGGTTCCTGGGAATTGAACTCAGGA
CCTCTAGAAGAGCAGTTAATGCTGTAAACTGCTGGGCCATCTCTCCAGCC
CTCAAAGCTTTTATTTTTTGAGATAGGATCTTAATGTCCAGAGTGGCCCC
CGACTCAGCTAAGGATGACTTTGAGCCTCCTGCTTCTGCCTCTGGGGTGC
AGAGATTGCANGCTTGTACTGCCCGCCATAACAAGATTATGTGGTTGTGG
GGATCAAACCCAAGCCTGCTAAGCAACTCCTCTCCTCGCTGAGTTATATC
CCCAGCCAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no533_e19.b1 MSMg01no533_e19.b1 CHROMAT_FILE:
MSMg01no533_e19.b1 PHD_FILE: MSMg01no533_e19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:10:28 2005
         (633 letters)



>mm_chr12_32551704_32552736
          Length = 1033

 Score = 1027 bits (531), Expect = 0.0
 Identities = 558/567 (98%), Gaps = 3/567 (0%)
 Strand = Plus / Plus

                                                                       
Query: 68  aaaacaaaacaaaacaaaacaatagaagcgttttaggacacctgactcagcgagcccagt 127
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct: 268 aaaacaaaacaaaacaaaacaacagaagcgttttaggacacctgactcagcgagctcagt 327

                                                                       
Query: 128 gtctagctttgtgggtgcagtgtatccacatgcagtttcaccccgtaatcaatgtcatgc 187
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 gtctagctttgtgggtgcagtgtatccacatgcagtttcaccccgtaatcaatgtcatgc 387

                                                                       
Query: 188 tcatttgtacctcaattcactgcagctactaaccgttcctctctgtggatttctctattc 247
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 388 tcatttgtacctcaattcactgcagctactaaccgttcctctctgtagatttctctattc 447

                                                                       
Query: 248 tggattcctcatgtaaatataatatcttattgtatagcctcttatgcctgccttcttacc 307
           |||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct: 448 tggattcctcatgtaaatataatagcttattgtatggcctcttatgcctgccttcttacc 507

                                                                       
Query: 308 ttacaatgctttcaggattcttccatgatataccatgttttagaacttcatgttaaatgc 367
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 ttacaatgctttcaggattcttccatgatataccatgttttagaacttcatgttaaatgc 567

                                                                       
Query: 368 caagtaatgttggctgtgtacatcttcactttataagttggttgacatttggttgtttaa 427
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 568 caagtaatgttggctgtgtacatcttcactttataagttggttgacatt-ggttgtttaa 626

                                                                       
Query: 428 ctttaggctatcatatgatagacactgctgtgaacaatagattgtgtgtacattacatct 487
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 627 ctttaggctatcatatgatagacactgctgtgaacaatcgattgtgtgtacattacatct 686

                                                                       
Query: 488 aagtgaatatgcattatcatttctcttgtataaactggggctttaattactaggttacta 547
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 aagtgaatatgcattatcatttctcttgtataaactggggctttaattactaggttacta 746

                                                                       
Query: 548 agttaaattcagatttgattttcacaaattcctggaatatcctc-aaagtggctacagtg 606
           ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct: 747 agttaaattcagatttgattttcacaaattcctggaatatc-tccaaagtggctacagtg 805

                                      
Query: 607 tcttatactcccaagagcagtttggag 633
           |||||||||||||||||||||||||||
Sbjct: 806 tcttatactcccaagagcagtttggag 832


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 633
Length of database: 1033
Length adjustment: 10
Effective length of query: 623
Effective length of database: 1023
Effective search space:   637329
Effective search space used:   637329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)