Query= MSMg01no533_g01.b1 MSMg01no533_g01.b1 CHROMAT_FILE:
MSMg01no533_g01.b1 PHD_FILE: MSMg01no533_g01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:10:34 2005
(245 letters)
>mm_chr12_37873986_37874630
Length = 645
Score = 408 bits (211), Expect = e-118
Identities = 232/239 (97%), Gaps = 3/239 (1%)
Strand = Plus / Minus
Query: 5 gaattctaaacatttccaacttacattaagaatatgctttttatacaaataccaaaaata 64
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 gaattctaaacatttaaaacttacattaagaatatgctttttatacaaataccaaaaata 317
Query: 65 gacatctgttaacattaactaagtgtacttgctttctaaaatttagctttgtctgaacct 124
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 316 gacatccgttaacattaactaagtgtacttgctttctaaaatttagctttgtctgagcct 257
Query: 125 agactttaataactgaaccatccctgcaatatgggagcacaaggtctagcca-tcctctc 183
|||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct: 256 agactttaataactgaaccatccctgcaatatgggagcacaaggtctagccagt-ctctc 198
Query: 184 tctctctctctctctctctctctctctctctctctctctctctctctctctccctctct 242
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 197 tctctctctctctctctctctctctctctctctctctctctctctctctct-cctctct 140
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 85
Number of extensions: 30
Number of successful extensions: 30
Number of sequences better than 10.0: 1
Number of HSP's gapped: 25
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space: 150096
Effective search space used: 150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no533_g01.g1 MSMg01no533_g01.g1 CHROMAT_FILE:
MSMg01no533_g01.g1 PHD_FILE: MSMg01no533_g01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:10:34 2005
(507 letters)
>mm_chr12_37706846_37707751
Length = 906
Score = 758 bits (392), Expect = 0.0
Identities = 477/512 (93%), Gaps = 17/512 (3%)
Strand = Plus / Plus
Query: 1 atttcatcctgcataatgctgactctgagctcatttccaattatcttttcccagtactct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atttcatcctgcataatgctgactctgagctcatttccaattatcttttcccagtactct 260
Query: 61 gtacagctcctactcttggtattagagaccagccagacatcctaggcgtagattttgtgg 120
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 261 gtacagctcctactcttggtattagagaccatccagacatcctaggcgtagattttgtgg 320
Query: 121 tgataataggaagcagcaggcatcagctaagtaaatttcctatctggagagagtgtctga 180
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 321 tgataataggaagcagcaggcatcagctaagtaagtttcctatctggagagagtgtctga 380
Query: 181 acttaaatttatcatagtttctttgttttctgatggaaaccaattccaaagaagtaaaaa 240
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccttaaattgatcatagtttctttgttttctgatggaaaccaattccaaagaagtaaaaa 440
Query: 241 ataaaaacttctaaacatcattctcttctttttttttcagacaaaacagcagaaacaaac 300
|||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct: 441 ataaaaacttctaaacatcattctctcctttttttt-cagacaaaacagcagaaacaaac 499
Query: 301 taattttgctatgatctagtatgacaaactctttaaatcactatttgaacagcagtgttc 360
||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct: 500 taattttgctatgatctagtatgacaaactctttatatcactatttgaac-------tta 552
Query: 361 atattttatggacttaaaac----tttaaatttctggacttttataatcatattctaatt 416
| || ||| |||||| | ||||||||||||||||||||||||||||||||||||
Sbjct: 553 a-atattaa--acttaatatggtgtttaaatttctggacttttataatcatattctaatt 609
Query: 417 ttaatgctatggcatagaataaaataatttttcactattaataatcttcaaagttgtaca 476
||||| |||||||||| ||||||||||||||| ||||||||| ||||||||||||||||
Sbjct: 610 ttaatactatggcataaaataaaataattttttgctattaatattcttcaaagttgtaca 669
Query: 477 ttttcgtgttcacga-gttttttgtgagtcag 507
||||| || |||| | ||||||||||||||||
Sbjct: 670 ttttcatggtcac-acgttttttgtgagtcag 700
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 507
Length of database: 906
Length adjustment: 10
Effective length of query: 497
Effective length of database: 896
Effective search space: 445312
Effective search space used: 445312
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
