NNNNAAGATNNNNTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCTGCCCACACTAACGGAAATATCTGCTGCAAGCAAGT
GCCTTTACCTCCTATGCTTATGGATCAACAGAATTAATATTGTAAAAATG
GATGCATTACTGAAAGTGGTCTATAGACTCAATGCAAAATTCCAATGACA
CTCTTCACATAGTCATAAAAGGCAACCCTAACCTTGATAAAAGAAGTACC
AAAGATCCAGAATAGGCAACAGAATCCTAAACCCAAAGAACAATGCTGGA
GGTATTCATATTGAGCCATAAGGCAAGGTCAACATGGAACTGGTGTAGAA
ACAGACCAATAGAATATAGATGGATGACCCCATAATAAACACAGCTAAAG
CCACCTGACTTTTGAAAATGATGTAAAAAACACACATTTGAAAACATGCA
GCCTCTTCAACAACTGATACTAGGAAAAGTAAATACCTACACTTAGGAGG
AAAACATTAAATCTAGATCATTCCCAATAATAACCAGTTAAATACATGAA
AGACTTGGACATAAGAGCCAATATTTTAAGGCCACTACAGAAAAGCATAG
AGAAATTAGTTGAGATACAGGGACAGATGAGGAATCTCTGAGGACTGAGT
TCAAAAGCACAGGGTATAATCCCCAGAATTGATAAATGGGACTATATGAA
ATTTAAAAGCTCTGCACAGCAAAGAAAATN

TGTATGTCACAATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTACATCAAGGGATAA
AATTGAACCAGTGCTCTCAGTGGCAGGAGGAAAAGACAGCCACACTCTCT
GCCTTCACAACTTAGTGCTTAAGTATCCTTTCCAAAACCAAAACTCTTCC
TCCCCCAGGACACTAGACCACTCTGCCCAATACTAGGACAAGATCCCAGG
GTCACAGCTCTAAATAAAGCAAGAATGACAATGGCTTTAGGTACAAGTAA
CTATCCAGAGGGGTTAGAAATCAAACAGTGCTTAAATTTTCTTCCCACAG
TTTACCAAAAGAAAATATTGCACATCTAACTCATTTTCAAACCTTCCCCA
ACCATGCACCTCAAACTGACAATACTAACAGAAATAGAGAATACAAATGG
TTTTAGAGGTTTGTGTTGTTGTTGGTGGTGGGTTTTTTGNTTATTTTTTT
TTTTCTTTTCTTTTTTTTTTTCNNCTTCCTTCCTTTCTTTTCTTTCTTTT
CTTTCTCCTTTTCTTCTTCCCTTCCTTTTCCTCTTTTTTCTCTTTCCCCT
TTCTTTGCTTCCATTTCTCCCCTCCCCTTTTCCTTTTTTTTCTCCCTCCT
CTTTTTTTTTTTTTTCCTTTTTCTTTTTCTTTCTCTTTTCCCTTCTTCCC
CTCTCCCCCTTGTTCTCTTCTCTCTTTCTTCCCTCCTTTCCTTCCCTTCT
TTTTTTCCCCCTT

Query= MSMg01no533_j02.g1 MSMg01no533_j02.g1 CHROMAT_FILE:
MSMg01no533_j02.g1 PHD_FILE: MSMg01no533_j02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:10:48 2005
         (406 letters)



>mm_chr12_30375173_30375978
          Length = 806

 Score =  783 bits (405), Expect = 0.0
 Identities = 405/405 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctacatcaagggataaaattgaaccagtgctctcagtggcaggaggaaaagacagccaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 ctacatcaagggataaaattgaaccagtgctctcagtggcaggaggaaaagacagccaca 546

                                                                       
Query: 61  ctctctgccttcacaacttagtgcttaagtatcctttccaaaaccaaaactcttcctccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 ctctctgccttcacaacttagtgcttaagtatcctttccaaaaccaaaactcttcctccc 486

                                                                       
Query: 121 ccaggacactagaccactctgcccaatactaggacaagatcccagggtcacagctctaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 ccaggacactagaccactctgcccaatactaggacaagatcccagggtcacagctctaaa 426

                                                                       
Query: 181 taaagcaagaatgacaatggctttaggtacaagtaactatccagaggggttagaaatcaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 taaagcaagaatgacaatggctttaggtacaagtaactatccagaggggttagaaatcaa 366

                                                                       
Query: 241 acagtgcttaaattttcttcccacagtttaccaaaagaaaatattgcacatctaactcat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 acagtgcttaaattttcttcccacagtttaccaaaagaaaatattgcacatctaactcat 306

                                                                       
Query: 301 tttcaaaccttccccaaccatgcacctcaaactgacaatactaacagaaatagagaatac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 tttcaaaccttccccaaccatgcacctcaaactgacaatactaacagaaatagagaatac 246

                                                        
Query: 361 aaatggttttagaggtttgtgttgttgttggtggtgggttttttg 405
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 aaatggttttagaggtttgtgttgttgttggtggtgggttttttg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 406
Length of database: 806
Length adjustment: 9
Effective length of query: 397
Effective length of database: 797
Effective search space:   316409
Effective search space used:   316409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)