BAC Information

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BAC

Clone NameMSMg01-533P16
Chromosome12 (Build37)
Map Location 78,255,431 - 78,255,967
singlet/doubletsinglet
Overlap geneLOC100041772
Upstream geneEsr2, Tex21, Mthfd1, Akap5, Zbtb25, Zbtb1, Hspa2, Gm70, LOC100041694, Plekhg3, Spnb1, Churc1, Gpx2, Rab15, Fntb, Max, LOC100041765
Downstream geneFut8, LOC230765, LOC666659
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-533P16.T7 (MSMg01no533_p16.b1)MSMg01-533P16.TJ (MSMg01no533_p16.g1)
ACCAG601773AG601774
length741747
length of high quality
(start - end)
594 (78 - 671)434 (79 - 512)
definitionCHROMAT_FILE: MSMg01no533_p16.b1 PHD_FILE: MSMg01no533_p16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:11:19 2005CHROMAT_FILE: MSMg01no533_p16.g1 PHD_FILE: MSMg01no533_p16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:11:19 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCCCCTTTTTNNAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTGCTGGTTTTTCTTCATCCCCATATAGTATCAAATAGT
CCCAAACCTCCAGGCTGTCTAGGCGTTCTGCTCCTCCCATCTCTGCACAG
GCCTGGCTGGGATTGCTTCAGGAGCTGAGAACATTTGCTTCCAGCTTTTC
TGATCCCTTCCCTTCCACTCTTTACTCTCTATTCTTTATTCTTTTTCTTC
TCCAGGTAATTCTGTGGGCTCTGTGGGCTCAGCTGGAACCCGCTTCTACA
GATCCAGCAACTCTCAATTCCGTGGGCTTAGCATCTTTACATAGAAAGCA
CATGTGGTGGGCTGAGGGTGCATCTCAGAGGTAGAGCTAGCAAGCATGAA
ATCCTAGATCGCCAACACACACACACACACACACACACACACACACACAC
ACCCTTGAAAAATCATCATGGGGAGGCAAGAAGTGACATGCATGTGAAAT
GGGGCAGGCAGCACGGATGGGGGTGGGTGATGGGTAGCCTTGCTTCTCAA
GGGTCCTAGGTAGAAAGATGGTGAGAACTATCATGCTTCCCTTTCTACTG
GCAAATAGATAGGTGCAAGCCACGGCAGGGGCTTCGTTTGGAATTGAAGT
ATGAATCTGGTGTATTTTACCAAGACACATAAGTCCATTGCACAGCTGAG
TAACTGAAACCCAGAGCACAGGAGACTTCCTGCCGCTCCCN
NNCCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGAGTTACAAGCCAGGCAGTG
GTGGCGCACGCCTTTAATTCCAGGATTTGGGAGGCAGACACAGGTGGATT
TCTGAGTTTGAGGCCAGCCTGGTTCTACAGAGTGAGTTAGCCAGGGCTAT
ACAGAGAAACCTTGACCCCCCACCCCCCCAAAAAAGAAGAGTTACAGGTG
GGGCTGGAGAGATGGCTCAAAAGTTAAGAGCACTTGGCTGTTCTTCCAGA
GGTCCTGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAACCATCTGT
AATGGGATCTGGTGCCGTCTTCTGGCCTACGGACACAGTCAGAATGCTGT
ATAGATAATAAATAAATCAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAG
AGAGAGAGAGATACTGGTGAAGCCAGAGTTGCAATGAGGATCTCAGGATG
CTGGCTACCTCATGGATGCATGATGTCCGCTGAGGAAAGCTGCTTGTGAC
AAGTGGGACTGGCTCACAGGGAGGCCATGTTTGCTGTAGGTTGCTGGAGC
AGGCTGATCAAATGTCCTCTATGGAACTGTAAGATTGGATGTGATTTCTG
CCATGTTTTCTCTTGTTTTTGGCCCAATAACTGTTTGTGATCCTCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no533_p16.b1 MSMg01no533_p16.b1 CHROMAT_FILE:
MSMg01no533_p16.b1 PHD_FILE: MSMg01no533_p16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:11:19 2005
         (594 letters)



>mm_chr12_78255431_78256424
          Length = 994

 Score =  973 bits (503), Expect = 0.0
 Identities = 532/549 (96%), Gaps = 12/549 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   atccccatatagtatcaaatagtcccaaacctccaggctgtctaggcgttctgctcctcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 atccccatatagtatcaaatagtcccaaacctccaggctgtctaggcgttctgctcctcc 478

                                                                       
Query: 61  catctctgcacaggcctggctgggattgcttcaggagctgagaacatttgcttccagctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 catctctgcacaggcctggctgggattgcttcaggagctgagaacatttgcttccagctt 418

                                                                       
Query: 121 ttctgatcccttcccttccactctttactctctattctttattctttttcttctccaggt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 ttctgatcccttcccttccactctttactctctattctttattctttttcttctccaggt 358

                                                                       
Query: 181 aattctgtgggctctgtgggctcagctggaacccgcttctacagatccagcaactctcaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 aattctgtgggctctgtgggctcagctggaacccgcttctacagatccagcaactctcaa 298

                                                                       
Query: 241 ttccgtgggcttagcatctttacatagaaagcacatgtggtgggctgagggtgcatctca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 ttccgtgggcttagcatctttacatagaaagcacatgtggtgggctgagggtgcatctca 238

                                                                       
Query: 301 gaggtagagctagcaagcatgaaatcctagatcgccaacacacacacacacacacacaca 360
           |||||||||||||||||||||||||||||||||||||            |||||||||||
Sbjct: 237 gaggtagagctagcaagcatgaaatcctagatcgcca------------acacacacaca 190

                                                                       
Query: 361 cacacacacacacacccttgaaaaatcatcatggggaggcaagaagtgacatgcatgtga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 cacacacacacacacccttgaaaaatcatcatggggaggcaagaagtgacatgcatgtga 130

                                                                       
Query: 421 aatggggcaggcagcacggatgggggtgggtgatgggtagccttgcttctcaagggtcct 480
           |||||||| ||||||  |||||| ||||||||||||||||||||||||| ||||||||||
Sbjct: 129 aatggggcgggcagcggggatggaggtgggtgatgggtagccttgcttcacaagggtcct 70

                                                                       
Query: 481 aggtagaaagatggtgagaactatcatgcttccctttctactggcaaatagataggtgca 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69  aggtagaaagatggtgagaactatcatgcttccctttctactggcaaatagataggtgca 10

                    
Query: 541 agccacggc 549
           |||||||||
Sbjct: 9   agccacggc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 594
Length of database: 994
Length adjustment: 10
Effective length of query: 584
Effective length of database: 984
Effective search space:   574656
Effective search space used:   574656
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)