Query= MSMg01no534_d11.b1 MSMg01no534_d11.b1 CHROMAT_FILE:
MSMg01no534_d11.b1 PHD_FILE: MSMg01no534_d11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:11:38 2005
(674 letters)
>mm_chr12_112620271_112621344
Length = 1074
Score = 1125 bits (582), Expect = 0.0
Identities = 621/638 (97%), Gaps = 7/638 (1%)
Strand = Plus / Minus
Query: 37 ccagtgcggaaccctgcctatggtgataagagttctctttctccctcatcccttccagca 96
|||||||| ||||||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct: 1074 ccagtgcgtaaccctgcctacggtgatgagagttctctttctccctcatcccttccagca 1015
Query: 97 tctgttctcagttgtcttgttgaactttgacattctgaatattgtcatttccttacaatt 156
|||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct: 1014 -------tcagttgtcttgttgaactttgacattctgaatattgttgtttccttacagtt 962
Query: 157 ttttctttgtttgtgtgtgggtgttttgcttgggtgcatgtctatgtaacacatcacatc 216
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 961 ttttctttgtttgtgtgtgggtgttttgcttgggtgcatgtctatgtaacacatcacatc 902
Query: 217 gtgtccatggaggccagagaggatatagcattgctctctgggactggaattactgacaac 276
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901 gtgtccatggaggccagagaggatatagcattgctctctgggactggaattactgacaac 842
Query: 277 tgtgagccaccatgtaggtgttaagagtcaaccccaagtcctgtagaagagcagctggca 336
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 841 tgtgagccaccatgtaggtgtcaagagtcaaccccaagtcctgtagaagagcagctggca 782
Query: 337 ttcttcaccatggaccatctatccagcacctgttagtatttcttcaatgttttccccgcc 396
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 781 ttcttcaccatggaccatctatccagcacctgttagtatttcttcaatgttttccctgcc 722
Query: 397 tttcatcttgcccacccttctctttctgttgcttacacatggctcatcacttgtggttgt 456
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 tttcatcttgcccacccttctctttctgttgcttacacatggctcatcacttgtggttgt 662
Query: 457 cctggggttcactggtgctccgttcatttctttggatccccctctttcttattttaaata 516
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cctggggttcactggtgctccgttcatttctttggatccccctctttcttattttaaata 602
Query: 517 attccatttgtctttttttataacatttacttatttgtgtgttaatgtgtgtttgtgtgt 576
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 attccatttgtctttttttataacatttacttatttgtgtgttaatgtgtgtttgtgtgt 542
Query: 577 gtgtgtgggcgtctgtgtgcatgcacacgcactcctgcacacacgtgtgggtagagttca 636
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 541 gtgtgtgggcgtctgtgtgcatgcacacgcactcctgcacactcgtgtgggtagagttca 482
Query: 637 gaggaccagcttttgcgggttactgttttcctttcgcc 674
||||||||||||||| ||||||||||||||||||||||
Sbjct: 481 gaggaccagcttttgagggttactgttttcctttcgcc 444
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 674
Length of database: 1074
Length adjustment: 10
Effective length of query: 664
Effective length of database: 1064
Effective search space: 706496
Effective search space used: 706496
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no534_d11.g1 MSMg01no534_d11.g1 CHROMAT_FILE:
MSMg01no534_d11.g1 PHD_FILE: MSMg01no534_d11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:11:38 2005
(592 letters)
>mm_chr12_112426968_112427959
Length = 992
Score = 1085 bits (561), Expect = 0.0
Identities = 584/597 (97%), Gaps = 9/597 (1%)
Strand = Plus / Plus
Query: 1 cacactaacttcaatgccccttgtgggtggtgctgtggttgacggtgtagccgctggaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 cacactaacttcaatgccccttgtgggtggtgctgtggttgacggtgtagccgctggaga 251
Query: 61 cccatctgtcgcctgtgtgattccagccagtgtcacctgtgctggaatcgggatcttcag 120
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 cccgtctgtcgcctgtgtgattccagccagtgtcacctgtgctggaatcgggatcttcag 311
Query: 121 agtcttgtgtccctgtgtctgtctgccttaaaggctgtggccagccacgcggttggggtg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 agtcttgtgtccctgtgtctgtctgccttaaaggctgtggccagccacgcggttggggtg 371
Query: 181 tttagtgtcttcatccttctctcccacagcctcttacttcaagttcattctccagaagaa 240
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 372 tttagtgtcttcatccttctctcccacagcctcttacttcaggttcattctccagaagaa 431
Query: 241 ttgtcagcgtctctgatgtaactgtctcactgggatgctgtgtctgtgcgcgttcacttt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 ttgtcagcgtctctgatgtaactgtctcactgggatgctgtgtctgtgcgcgttcacttt 491
Query: 301 catcagaggct---------ggtttctttagttgttctattaacactctgtgggctggcc 351
||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 catcagaggctagttcagctggtttctttagttgttctattaacactctgtgggctggcc 551
Query: 352 aagaactctctaactagcagactggttttgaactcatgacccacctgccaagtgctcagg 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 aagaactctctaactagcagactggttttgaactcatgacccacctgccaagtgctcagg 611
Query: 412 gacacttaagttttacctgatccctatcttcatagttcgaattatttaaaagatcatttg 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 gacacttaagttttacctgatccctatcttcatagttcgaattatttaaaagatcatttg 671
Query: 472 agggggaggggacgtacctcagttggtactgtgtttgcctagtgtgcatagagtcctgga 531
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 agggggaggggatgtacctcagttggtactgtgtttgcctagtgtgcatagagtcctgga 731
Query: 532 ttctgtccccaacactgcatatattgagtgtagtgacccagaccaataattctggca 588
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 732 ttctgtccccaacactgcatatattgagtgtagtgacccagaccaataattccggca 788
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 592
Length of database: 992
Length adjustment: 10
Effective length of query: 582
Effective length of database: 982
Effective search space: 571524
Effective search space used: 571524
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
