Query= MSMg01no535_a23.b1 MSMg01no535_a23.b1 CHROMAT_FILE:
MSMg01no535_a23.b1 PHD_FILE: MSMg01no535_a23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:12:46 2005
(694 letters)
>mm_chr12_66302478_66303571
Length = 1094
Score = 1276 bits (660), Expect = 0.0
Identities = 682/691 (98%), Gaps = 3/691 (0%)
Strand = Plus / Minus
Query: 4 ggaattctctaacactaacgaaacattgaattttcttagcaaaaacatgattattagtat 63
||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 879 ggaatcctctaacactaaggaaacattgaattttcttagcaaaaacatgattattagtat 820
Query: 64 attagaaaaagttcttgcaaagaaaactctaagatcttccacttctaagcctggactcag 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 819 attagaaaaagttcttgcaaagaaaactctaagatcttccacttctaagcctggactcag 760
Query: 124 tggggacgcaggggttagtgctctctgcctttccatacctaataagaagacgtgcttgtc 183
|||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct: 759 tggggacgcaggggttagtgctctctgcctttccatacctaataagaagacgcgattgtc 700
Query: 184 agtatttaagaaatatttcctacaagtctggttttttagctttacatttagtttaacttt 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 699 agtatttaagaaatatttcctacaagtctggttttttagctttacatttagtttaacttt 640
Query: 244 tgtgtgaataagaaaatcctcccagagttatgaaagggcaacattgaacaaatccacaga 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 tgtgtgaataagaaaatcctcccagagttatgaaagggcaacattgaacaaatccacaga 580
Query: 304 aaattactaaattagctttggtccagaatactccaatttaggctgccaacactactctgc 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 aaattactaaattagctttggtccagaatactccaatttaggctgccaacactactctgc 520
Query: 364 caagaacatcccaccaactgagatatcaccacatgaagtgtatgtattttaaaagtacat 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 caagaacatcccaccaactgagatatcaccacatgaagtgtatgtattttaaaagtacat 460
Query: 424 tatgcataaatacaaggccaaatgctaaaaagataaattcttttttgaaacatataagca 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 tatgcataaatacaaggccaaatgctaaaaagataaattcttttttgaaacatataagca 400
Query: 484 acaacagagattattttgataatgagttttaaacataactagtcatttttaaatgaaata 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 acaacagagattattttgataatgagttttaaacataactagtcatttttaaatgaaata 340
Query: 544 cacattcaaaagataccagtcacaaaatctacatcataccatgcagctgacaattcccta 603
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 339 cacattcaaaagataccagtcacaaaatctacatcttaccatgcagctgacaattcccta 280
Query: 604 gtttaaaaataggttaaatgtggaagaagcaagcaaggccaaagaaaatacaatccttaa 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 gtttaaaaataggttaaatgtggaagaagcaagcaaggccaaagaaaatacaatccttaa 220
Query: 664 aacaaattgaaaccagnggggttttttttgt 694
|||||||||||||||| || |||||||||
Sbjct: 219 aacaaattgaaaccagtgg---tttttttgt 192
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 694
Length of database: 1094
Length adjustment: 10
Effective length of query: 684
Effective length of database: 1084
Effective search space: 741456
Effective search space used: 741456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no535_a23.g1 MSMg01no535_a23.g1 CHROMAT_FILE:
MSMg01no535_a23.g1 PHD_FILE: MSMg01no535_a23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:12:46 2005
(591 letters)
>mm_chr12_66147172_66148162
Length = 991
Score = 1094 bits (566), Expect = 0.0
Identities = 586/594 (98%), Gaps = 3/594 (0%)
Strand = Plus / Plus
Query: 1 caggactacataatgagacctctctttaaatattaagtcattggatcctatgttttgtgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caggactacataatgagacctctctttaaatattaagtcattggatcctatgttttgtgt 260
Query: 61 atctcttgccaagaatgtataaatactgtatttttaattaaaaaaattatttaatggatg 120
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atctctcgccaagaatgtataaatactgtatttttaattaaaaaaattatttaatggatg 320
Query: 121 cgggtgtcttgcctgcatgtatgtctatgtaacatgtgagtgcctggtgtctgtgaaggc 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgggtgtcttgcctgcatgtatgtctatgtaacatgtgagtgcctggtgtctgtgaaggc 380
Query: 181 cataaaacagtgttggatcccagatccaactagagttagagatgactgggccaccttgtg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cataaaacagtgttggatcccagatccaactagagttagagatgactgggccaccttgtg 440
Query: 241 ggtgctgagtttctgggttctctagaagggcagtctgtgcacgttaatccttcctgtgtt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggtgctgagtttctgggttctctagaagggcagtctgtgcacgttaatccttcctgtgtt 500
Query: 301 aaatagtttagtctttgtgtgttgattgaaaatgtcctctttgtgttcattaaattatta 360
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaatagtttagtctttgtatgttgattgaaaatgtcctctttgtgttcattaaattatta 560
Query: 361 cacctttttttcctgtttcctcttaggcactatttttttt---aagatttattattttac 417
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 561 cacctttttttcctgtttcctcttaggcactatttttttttttaagatttattattttac 620
Query: 418 tttgtgtgaatgaatgcttacctgtatatatgtacatgtgccgtatctctaccaggtacc 477
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 621 tttgtgtgaatgaatgcttacctgtgtatatgtacatgtgccgtatctctaccaggtacc 680
Query: 478 caggaaactataatgcctttcttatgatattttcaggaaaatgcttaactcattacactt 537
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 681 caggaaactataatgcctttcttatgatattttcaggaaaatgcttaactcattaccctt 740
Query: 538 ttataaaaatacttatagtatttaatagtatataaaaatcaaatttgaattcct 591
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ttataaaaatacttatagtatttaatagtatataaaaatcaaatttgaattcct 794
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 591
Length of database: 991
Length adjustment: 10
Effective length of query: 581
Effective length of database: 981
Effective search space: 569961
Effective search space used: 569961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
