BAC Information

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BAC

Clone NameMSMg01-535O19
Chromosome12 (Build37)
Map Location 53,294,690 - 53,490,598
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039525, 6030408C04Rik, Scfd1, LOC620390, LOC100039578, Coch, Strn3, Ap4s1, Hectd1, EG544864, LOC100039476, Heatr5a, LOC676784, 6530401N04Rik, Gpr33, LOC100039627, Nubpl
Downstream geneArhgap5, Akap6, Npas3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-535O19.T7 (MSMg01no535_o19.b1)MSMg01-535O19.TJ (MSMg01no535_o19.g1)
ACCAG603260AG603261
length767762
length of high quality
(start - end)		669 (51 - 719)658 (79 - 736)
definitionCHROMAT_FILE: MSMg01no535_o19.b1 PHD_FILE: MSMg01no535_o19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:13:53 2005CHROMAT_FILE: MSMg01no535_o19.g1 PHD_FILE: MSMg01no535_o19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:13:53 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,489,934 - 53,490,598)(53,294,690 - 53,295,347)
sequence
NNNAACTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTGAGGGTGTGTAGTGATCTTGTTGCAGCAACTTTGGGGGT
AGAGGAGAGATTCCCAGGCAGGATTTAGGCCAGGACACTTGCGGGTGATA
GACCCAACAGAACTCTGTTGTCACCGCTGAACACAGTGAGCCGCAAGCTC
TGCAGTGGAGGAATAAGATGTGTCTGTCTAATAGATTTCTCCTGGTCCAG
TGTGAATGGCTTCCAGGCACTTAAAGGACTCAATGGCTGAATATTTCATC
TTAATCCCTGCTCTGTACAGGAAACATGATAGACATTATTGGGCTATCCC
GACTTAAGATGTACCCTCACACAGGTTGGTTTCAAACCCTGAGGCTCATT
ACAGCAGCCTTTCTTATAAATATTAATAAATAACTCCCATCGCTCTTTAG
AAAAACAGAGTCAGTCTTTTCAGTGTCTTGGAGAAGACTTGTGAGGAGGG
GATGGGGGTTCTAAGCACAGCTCAGACATGAAACGAAACCCTCTGAACAG
AGGCTCTCTACCTGCTAACATTTGTTAAACCACGGGGCTTCCTTAATTTC
TCAATCCTTTATCTTGCTTATTTTCTTTTTGAGACAGGGTCTCTATGTTG
TCCAGACTAACCTTGAACTTAAAATCCTCCTGCCTCAGCCTCCAATCTGT
TGGATCTACCTGCATGTGCCACCCCATGTCCAGNTCATGTGTGATTTCTC
TAAAGTGTAAGGTCCCC

TTTACTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTATGAAATTGCCTCTTAGAACC
TCCTTAATGTGTCTGTCCCATCAGTTTGAGAATATTTTATGTTCATTTTC
ATTCAATTCTAGAAAGTCTCTTAATTTATTTCTTGACCCATTTTTTTTCA
TTTGGTAGTGAGTTGTCCAGTTTCCATGAATTTGTAAGCTTGTTGTTGTT
TCTGCTTATTGTTGAAATTTAGTTTTAGTTTATGGTGGTCAGATATCTTG
CAGGGCATCATTTCAATTTTCTTTCTGTTAGTTATTATTTCTTTGTATTG
AGACCTGCTTTGTGTATGTCCTATACTACCAATGTTATTTTTCCTCCTTA
TCACATACTTGAAGGCTGCCAGATATATTATTTTTCCTGAAGCAAGTTCT
CCTGTTGTCAGTCATTTGAAAGACTGTCAGTCTTAGTTTTAAAGACAGCC
CCCTTCACTGCTTTATCCCTTCCTTCAATTAGATTCTGGGAATATTGCTG
TAAATAGTTAAGTTATGAAACCTGGGTCCCAAAGATCCTTTGCCGACTGC
CACCTTCTTTTACAGGTTCAAAACACTGTTAATGTTGTGTTTTTCTTTAC
CGTTGAGAGTAGTAACTGTCCTATTTCATTTGGAGGTATTTGATAGTTGC
TTTACACAATACCATTCGTGTTTATAAATCATCCAACAAAATAAATGGCA
AAAAACCTTTAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no535_o19.b1 MSMg01no535_o19.b1 CHROMAT_FILE:
MSMg01no535_o19.b1 PHD_FILE: MSMg01no535_o19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:13:53 2005
         (669 letters)



>mm_chr12_53489829_53490897
          Length = 1069

 Score = 1263 bits (653), Expect = 0.0
 Identities = 662/665 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctgagggtgtgtagtgatcttgttgcagcaactttgggggtagaggagagattcc 64
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 770 gaattctgagggtgtgtagtgatcttgttgcagcgactttgggggtagaggagagattcc 711

                                                                       
Query: 65  caggcaggatttaggccaggacacttgcgggtgatagacccaacagaactctgttgtcac 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 710 caggcaggatttaggccaggacacttgcgggtgatagacccaacagaactctgttgtcac 651

                                                                       
Query: 125 cgctgaacacagtgagccgcaagctctgcagtggaggaataagatgtgtctgtctaatag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 cgctgaacacagtgagccgcaagctctgcagtggaggaataagatgtgtctgtctaatag 591

                                                                       
Query: 185 atttctcctggtccagtgtgaatggcttccaggcacttaaaggactcaatggctgaatat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 atttctcctggtccagtgtgaatggcttccaggcacttaaaggactcaatggctgaatat 531

                                                                       
Query: 245 ttcatcttaatccctgctctgtacaggaaacatgatagacattattgggctatcccgact 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 ttcatcttaatccctgctctgtacaggaaacatgatagacattattgggctatcccgact 471

                                                                       
Query: 305 taagatgtaccctcacacaggttggtttcaaaccctgaggctcattacagcagcctttct 364
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 470 taagatgtaccctcacacaggttggtttcaaaccctgaggctcattacagcaacctttct 411

                                                                       
Query: 365 tataaatattaataaataactcccatcgctctttagaaaaacagagtcagtcttttcagt 424
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 tataaacattaataaataactcccatcgctctttagaaaaacagagtcagtcttttcagt 351

                                                                       
Query: 425 gtcttggagaagacttgtgaggaggggatgggggttctaagcacagctcagacatgaaac 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 gtcttggagaagacttgtgaggaggggatgggggttctaagcacagctcagacatgaaac 291

                                                                       
Query: 485 gaaaccctctgaacagaggctctctacctgctaacatttgttaaaccacggggcttcctt 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 gaaaccctctgaacagaggctctctacctgctaacatttgttaaaccacggggcttcctt 231

                                                                       
Query: 545 aatttctcaatcctttatcttgcttattttctttttgagacagggtctctatgttgtcca 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 230 aatttctcaatcctttatcttgcttattttctttttgagacagggtctctatgttgtcca 171

                                                                       
Query: 605 gactaaccttgaacttaaaatcctcctgcctcagcctccaatctgttggatctacctgca 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 170 gactaaccttgaacttaaaatcctcctgcctcagcctccaatctgttggatctacctgca 111

                
Query: 665 tgtgc 669
           |||||
Sbjct: 110 tgtgc 106


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 669
Length of database: 1069
Length adjustment: 10
Effective length of query: 659
Effective length of database: 1059
Effective search space:   697881
Effective search space used:   697881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no535_o19.g1 MSMg01no535_o19.g1 CHROMAT_FILE:
MSMg01no535_o19.g1 PHD_FILE: MSMg01no535_o19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:13:53 2005
         (658 letters)



>mm_chr12_53294490_53295547
          Length = 1058

 Score = 1234 bits (638), Expect = 0.0
 Identities = 653/658 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tatgaaattgcctcttagaacctccttaatgtgtctgtcccatcagtttgagaatatttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tatgaaattgcctcttagaacctccttaatgtgtctgtcccatcagtttgagaatatttt 260

                                                                       
Query: 61  atgttcattttcattcaattctagaaagtctcttaatttatttcttgacccatttttttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgttcattttcattcaattctagaaagtctcttaatttatttcttgacccatttttttt 320

                                                                       
Query: 121 catttggtagtgagttgtccagtttccatgaatttgtaagcttgttgttgtttctgctta 180
           |||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 321 cattcggtagtgagttgtccagtttccatgaatttgtaaacttgttgttgtttctgctta 380

                                                                       
Query: 181 ttgttgaaatttagttttagtttatggtggtcagatatcttgcagggcatcatttcaatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgttgaaatttagttttagtttatggtggtcagatatcttgcagggcatcatttcaatt 440

                                                                       
Query: 241 ttctttctgttagttattatttctttgtattgagacctgctttgtgtatgtcctatacta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttctttctgttagttattatttctttgtattgagacctgctttgtgtatgtcctatacta 500

                                                                       
Query: 301 ccaatgttatttttcctccttatcacatacttgaaggctgccagatatattatttttcct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccaatgttatttttcctccttatcacatacttgaaggctgccagatatattatttttcct 560

                                                                       
Query: 361 gaagcaagttctcctgttgtcagtcatttgaaagactgtcagtcttagttttaaagacag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gaagcaagttctcctgttgtcagtcatttgaaagactgtcagtcttagttttaaagacag 620

                                                                       
Query: 421 cccccttcactgctttatcccttccttcaattagattctgggaatattgctgtaaatagt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cccccttcactgctttatcccttccttcaattagattctgggaatattgctgtaaatagt 680

                                                                       
Query: 481 taagttatgaaacctgggtcccaaagatcctttgccgactgccaccttcttttacaggtt 540
           |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct: 681 taagttatgaaacctgggtcccaaagatcctttgccaactgccaccttcttttataggtt 740

                                                                       
Query: 541 caaaacactgttaatgttgtgtttttctttaccgttgagagtagtaactgtcctatttca 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 caaaacactgttaatgttgtgtttttctttaccgttgagagtagtaactgtcctatttca 800

                                                                     
Query: 601 tttggaggtatttgatagttgctttacacaataccattcgtgtttataaatcatccaa 658
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tttggaggtatttgatggttgctttacacaataccattcgtgtttataaatcatccaa 858


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 658
Length of database: 1058
Length adjustment: 10
Effective length of query: 648
Effective length of database: 1048
Effective search space:   679104
Effective search space used:   679104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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