BAC Information

Click to search

BAC

Clone NameMSMg01-536A07
Chromosome12 (Build37)
Map Location 115,178,969 - 115,351,101
singlet/doubletdoublet
Overlap geneIgh, Ighv4-1, Ighv3-1, Ighv11-1, Ighv14-2, Ighv4-2, Ighv3-2, Ighv11-2, Ighv14-3, EG629812, Ighv6-2, Ighv9-1, Ighv12-1, EG629818
Upstream geneNudt14, Brf1, Btbd6, Pacs2, Tex22, Mta1, Crip2, Crip1, 4930427A07Rik, LOC676349, Tmem121, Igh-2, Gm900, Igh-1b, Igh-3, Ighg1, AI324046, LOC668370, LOC668375, EG382645, Igh-5, Igh-6, Ighj4, Ighj3, Ighj2, Ighj1, Ighd4-1, Ighd3-2, Ighd5-6, Ighd2-8, Ighd5-5, Ighd2-7, Ighd5-8, Ighd5-4, Ighd2-6, Ighd5-7, Ighd5-3, Ighd2-5, Ighd5-2, Ighd2-4, Ighd6-2, Ighd2-3, Ighd6-1, Ighd1-1, 4930523C11Rik, Ighd3-1, Ighd5-1, Adam6, Ighv5-1, Ighv2-1, Ighv5-2, Ighv2-2, Ighv5-3, Ighv5-4, Ighv6-1, Ighv2-3, Ighv5-5, Ighv5-6, Ankrd12-like, Ighv5-7, EG668389, Ighv5-8, Ighv5-9, Ighv5-10, Ighv2-5, Ighv5-11, Ighv5-12, Ighv2-6, Ighv5-9-1, EG628098, Ighv2-9-1, Ighv5-13, Ighv2-6-8, EG629785, Ighv2-7, LOC668405, Ighv5-15, Ighv5-16, Ighv5-17, Ighv5-18, Ighv2-8, Ighv2-9, Ighv5-19, Ighv7-1, Ighv7-2, Ighv14-1
Downstream geneIghv12-2, Ighv9-3, Ighv7-3, Ighv15-1, Ighv14-4, EG668438, Ighv7-4, EG629833, EG633457, Ighv13-1, Ighv3-6, EG636260, Ighv3-7, Ighv5-21, Ighv3-8, Ighv8-1, Ighv1-1, Ighv13-2, EG435321, Ighv6-3, EG628398, EG639510, Ighv6-6, EG432701, EG629849, Ighv1-2, Ighv10-1, Ighv1-3, Ighv1-4, Ighv10-2, EG668469, EG380809, Ighv1-6, EG668474, Ighv10-4, Ighv1-8, Ighv15-2, Ighv1-9, Ighv1-10, Ighv1-11, EG629860, Ighv1-13, Ighv1-14, Ighv1-15, EG629866, Ighv1-17-1, Ighv1-17, Ighv1-18, EG668493, Ighv1-19, EG668497, Ighv1-21-1, Ighv1-21, Ighv1-22, Ighv1-23, Ighv1-24, Ighv1-25, Ighv1-26, Ighv1-27, Ighv1-28, Ighv1-29, Ighv1-30, Ighv1-31, Ighv1-32, Ighv1-33, Ighv1-34, EG668515, Ighv1-36, Ighv1-37, Ighv1-38, Ighv1-39, Ighv1-40, Ighv1-41, EG629906, EG629908, Ighv1-44, Ighv1-45, Ighv1-46, Ighv1-47, Ighv8-3, EG629919, Ighv1-48, Ighv1-49, EG640506
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-536A07.T7 (MSMg01no536_a07.b1)MSMg01-536A07.TJ (MSMg01no536_a07.g1)
ACCAG603332AG603333
length736741
length of high quality
(start - end)		501 (53 - 553)660 (82 - 741)
definitionCHROMAT_FILE: MSMg01no536_a07.b1 PHD_FILE: MSMg01no536_a07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:14:00 2005CHROMAT_FILE: MSMg01no536_a07.g1 PHD_FILE: MSMg01no536_a07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:14:00 2005
singlet/doubletdoubletdoublet
BLAST hituniqueplural
Map location.(115,350,774 - 115,351,101)(115,178,969 - 115,179,713)
sequence
TTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCACAGCCACTGCATTGGGATCCGTCTGTGCCATTATTGT
TAGGTAGATATCTCTTTAGGGCACCATTTGATTATACATGCACAAACATA
CCGACAAACACACACACATATAGCATAATAAATATAATTAATATAATATA
ATATAATAATATATGTGTGTATATGTATATGTATGTGTATGTAATGTTGT
TGAGGTCTCTCATCTGCTCATCACAGGATAGCACAAGTTTGACCAAGCTT
ACCTCAAGCTGTAGCCAGGTGGGTGTTGAGTCATAGAACAGCACTGGAAC
CCCACCCAGGCCTGGAAAATCACAGTCTGAGGCTCAGGACAGCCAATGCT
GGCTCGGGGGTCCCCAGACCTAAAGAAGGCACAGCCATTTGCTTCTCAGA
TTCTTGGGCATCCAGATATCACTGGAACACATGGAAGAGATGAGGATATA
TGCATATACAATTATTCACTTTTTGACACGTTGCTTAATGAATATGAACC
AATCTCCTTTACTGCTTCTAACTATTTTAGGACTGACATCAATTCTATTA
CATATTATAACACTAAAGCTTATTTGTCCCTTATTTCCATACCCTGGATA
AACTACCATCTAAAGAGAACATATGGTGGGATTCATGGTTCTAGCTTTAT
ATGTAGCAGATTATGTTCTCATTCGCCTTCAATGGG

CCCGGCTCGATGCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGTGACAGAGTGGGACAAG
GGAGAGATTTCCATGAACTGTGAGAAAATTGAACACTTGAAACTGAAGGA
GAGGTTACTAACTCCATTAGCATAATAATTTGGGTAGGTTAATAAGTTAT
GATCTGGTTAGAGAACAAACCAGAGCTTGTAGCATAAGCAGTTATTAATG
TATAATGCAAACCCAGAACCCACAGCTAGGCATTATGCTGAGAGAGGGAG
AGAGAGAGAGAGAGAGACAGAGACAGAGGCAGAGACAGAGAATGAAAGAG
ACACCTTGGAAGACTCAGCTCTAAATGGTATGTGTAAATCAGTTCATACC
TCTCAGAGCTCAGGAATTCGAGCAGAAGATGAAGTAAAAGATAGAGTGTC
TTGAAGATACCAGGAGAATAAGGGCCTCTAAAATAACCAAGCAAAGCTTA
TGTAAACTCTCAGCAAGCACATGGCCTACAGATGTCTACACTAAGACCAC
TGTGGATATATTATAGCTTTAAGTTTAGTATTTTTATGGGAATCCAGAGT
ATATGGACTAGTATATCTCTGATTCTTTTAGGTTCTTTTATTTTTGTTGA
TTTGTCTTTTCCAACTTTGATGTGAATGTCTTTTTAATTGTTTTCAAAAT
TTTATTAGATATTTTCTTCATTTACATTTCAAATGTTATCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no536_a07.b1 MSMg01no536_a07.b1 CHROMAT_FILE:
MSMg01no536_a07.b1 PHD_FILE: MSMg01no536_a07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:14:00 2005
         (501 letters)



>mm_chr12_115350774_115351674
          Length = 901

 Score =  634 bits (328), Expect = 0.0
 Identities = 328/328 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcacagccactgcattgggatccgtctgtgccattattgttaggtagatatctctt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 gaattcacagccactgcattgggatccgtctgtgccattattgttaggtagatatctctt 269

                                                                       
Query: 65  tagggcaccatttgattatacatgcacaaacataccgacaaacacacacacatatagcat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 tagggcaccatttgattatacatgcacaaacataccgacaaacacacacacatatagcat 209

                                                                       
Query: 125 aataaatataattaatataatataatataataatatatgtgtgtatatgtatatgtatgt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 aataaatataattaatataatataatataataatatatgtgtgtatatgtatatgtatgt 149

                                                                       
Query: 185 gtatgtaatgttgttgaggtctctcatctgctcatcacaggatagcacaagtttgaccaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 148 gtatgtaatgttgttgaggtctctcatctgctcatcacaggatagcacaagtttgaccaa 89

                                                                       
Query: 245 gcttacctcaagctgtagccaggtgggtgttgagtcatagaacagcactggaaccccacc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 88  gcttacctcaagctgtagccaggtgggtgttgagtcatagaacagcactggaaccccacc 29

                                       
Query: 305 caggcctggaaaatcacagtctgaggct 332
           ||||||||||||||||||||||||||||
Sbjct: 28  caggcctggaaaatcacagtctgaggct 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 501
Length of database: 901
Length adjustment: 10
Effective length of query: 491
Effective length of database: 891
Effective search space:   437481
Effective search space used:   437481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no536_a07.g1 MSMg01no536_a07.g1 CHROMAT_FILE:
MSMg01no536_a07.g1 PHD_FILE: MSMg01no536_a07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:14:00 2005
         (660 letters)



>mm_chr12_115178769_115179829
          Length = 1061

 Score =  708 bits (366), Expect = 0.0
 Identities = 613/752 (81%), Gaps = 99/752 (13%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtgacagagtgggacaagggagagatt-tccatgaactgtgagaaaattgaacacttga 59
           ||||||||||||||||||| |||||||| ||||||||||||||||||||| |||||||||
Sbjct: 201 tgtgacagagtgggacaagtgagagattctccatgaactgtgagaaaattaaacacttga 260

                                                                       
Query: 60  aactgaaggagaggttactaactccattag-cataataatttgggtaggttaataagtta 118
           |||||||||||||||||||||||||||| | || ||||||||||||||||||||||||||
Sbjct: 261 aactgaaggagaggttactaactccatt-gacagaataatttgggtaggttaataagtta 319

                                                                       
Query: 119 tgatctggttagagaacaaaccagagcttgtagcataagcagttattaatgtataatgca 178
           ||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct: 320 tgagctggttagagaacaagccagagcttgtagcataagcagttattaatgtataatcca 379

                                                                       
Query: 179 aacccagaacccacagctaggcattatgctgagagagggagaga---------------- 222
           ||  ||||||||||||| ||||||||||||||||||||||||||                
Sbjct: 380 aatgcagaacccacagccaggcattatgctgagagagggagagaaagcaagaaagagaaa 439

                                                                       
Query: 223 ------------------------------------------gagagagagagagacaga 240
                                                     ||||||||||||||||||
Sbjct: 440 gagagagagagagagagagagagagagagagagagagagagagagagagagagagacaga 499

                                                                       
Query: 241 --gacaga--ggcaga--gacaga--------------gaatgaaagagacaccttggaa 280
             ||||||  | ||||  ||||||              |||||| |||||||||||||||
Sbjct: 500 cagacagacagacagacagacagacagacagacagacagaatgagagagacaccttggaa 559

                                                                       
Query: 281 gactcagctctaaatggtatgtgtaaatcagttcatacctctcagagctcaggaattcga 340
            |||||||| |||||||||||||| |||||  ||| ||||||| |||||||||||||| |
Sbjct: 560 tactcagctataaatggtatgtgttaatcaaatcacacctctctgagctcaggaattcca 619

                                                                       
Query: 341 gcagaagatgaagtaaaagatagagtgtcttgaagataccaggagaataagggcctctaa 400
           ||| ||||||||||||||||    |||||||||||| |  ||||| |||| |||||||||
Sbjct: 620 gcaaaagatgaagtaaaaga----gtgtcttgaagaaaaaaggaggataatggcctctaa 675

                                                                       
Query: 401 aataaccaagcaaagcttatgtaaactctcagcaagcacatggcctacagatgtctacac 460
           ||||||||| |||||||||||||||||||||||||  |||||||||||| ||| ||| ||
Sbjct: 676 aataaccaaacaaagcttatgtaaactctcagcaaatacatggcctacacatgcctatac 735

                                                                       
Query: 461 taagaccactgtggatatattatagctttaagtttagtatttttatgggaatccagagta 520
           ||||||||||||| |||||||||||||||||||| |||||||||||||||| |||| |||
Sbjct: 736 taagaccactgtgtatatattatagctttaagttcagtatttttatgggaagccagggta 795

                                                                       
Query: 521 tatggactagtatatctctgattctttt--------a---ggttcttttatttttgttga 569
           || |||||||||||||||||||||||||        |   ||||||||||||||||||| 
Sbjct: 796 taaggactagtatatctctgattcttttgtcttctcattgggttcttttatttttgttgg 855

                                                                       
Query: 570 tttgtcttttccaactttgatgtgaatgtctttttaattgttttcaa-aattttattaga 628
           ||||||||||||||||||||||||||||||||||||||| ||||| | ||||||||||||
Sbjct: 856 tttgtcttttccaactttgatgtgaatgtctttttaatt-ttttccataattttattaga 914

                                           
Query: 629 tattttcttcatttacatttcaaatgttatcc 660
           ||||| ||||||||| |||||||||| |||||
Sbjct: 915 tattt-cttcatttatatttcaaatgctatcc 945


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 43
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 660
Length of database: 1061
Length adjustment: 10
Effective length of query: 650
Effective length of database: 1051
Effective search space:   683150
Effective search space used:   683150
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |