BAC Information

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BAC

Clone NameMSMg01-536D22
Chromosome12 (Build37)
Map Location 62,076,038 - 62,186,988
singlet/doubletdoublet
Overlap genenone
Upstream geneEG622488, LOC665665, Ppia-ps12_475.1
Downstream geneLOC100040300, LOC665677, Nanog-ps2, Lrfn5, LOC665699, LOC665707, LOC100040403
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-536D22.T7 (MSMg01no536_d22.b1)MSMg01-536D22.TJ (MSMg01no536_d22.g1)
ACCAG603504AG603505
length755736
length of high quality
(start - end)		655 (55 - 709)540 (59 - 598)
definitionCHROMAT_FILE: MSMg01no536_d22.b1 PHD_FILE: MSMg01no536_d22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:14:17 2005CHROMAT_FILE: MSMg01no536_d22.g1 PHD_FILE: MSMg01no536_d22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:14:17 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(62,186,495 - 62,186,988)(62,076,038 - 62,076,577)
sequence
NTTTTTTTTCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCAGGAGTCATGCAGTGGTGACCTTAGCTGAGACTCAT
ATCAGTGAGGATATGGAACCTGTAAAAGCCACCTCCTATATCCAGGCATG
AACTGCCTATAGAGGGGTAAGTAAATCCAATCCACCCACCAAACTTCTGA
CCTAAAATTTTTCCTGTCTACAGAAATGCAAGGGCAAAGATGCAGCAAAG
GCCAAGGGAATAGCTAACCAATAACTGATCCAACTTGAAACCCATCCAAT
GGCAGGCACCAATTCCTGACACTATTAATGATACTCTGTTATGCTTGCAA
AAAGGAGCCTATTAGGCTTTTAGTATATTTTGTAATTTAAAATATTTGGA
AATAAATTTAAAAATCAAGCATAAGGAATGCTTTACTCCAAACTATCTCA
CAACATATAATCTTCCATATGTATATATTTTATCAATAAAGAGTTATTAC
TAGCAGAGTTCTTCAGAATCATGATGTCCTAGTAACTAGTGAAGTATGTA
GCAAATAATCATATTTATATATGCATATGAATGTATAAATAATACATAAG
CATTATTAACTAGTTACATACTGAAACAGATAATATACAATGGGACACTT
TCATTGAGATGGAATACAATGAAACAAAAAGAACTCTGCAGAGCTATTTG
GATTAACAAATAGNCACTATTGATATCAGTGAGTCAGTTCTTTAGAAAGA
TGGGA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXAACATCTTCTCATGTACCAGAACAAGTTGCTGCATTGGTACT
TCTCTTTTCTGGTGTGCTGAGTTCAAAAGTGCAAGAGGTCCCTTTCCATT
CCTCTTTGCAGTATAAACATTTGTCACTGCCTCAGTTGAGAGTCCCCTCA
TGACCACTTTCTCAGACTTTCAAATGTATGCAAAATTCTTACGCATGTGG
GTAAAACTCATTTCTTTTCCCTTCTGTATTAGTAATATATGTGCTGTTGG
TATAAAATATCTTACAGGAGCAACTTAAAAGGGAAGCCTATTTTGCTGTT
AGTCCTGTATACAGTCCACAATGTCTGTGAAGTCATGGGAACAGGAGCTT
GAGGAAGCTGGGCACATTGCTTTTACTGTTAAACTTGTTTTTCATTTTGA
TTAAGGCTGGGTCTCCATCACATGGAATGGCATAACCCAAATTAGAGTGT
GTCTTTCCACCTCCATTAGCCAAATTTAATACTTTCTCGTGGAGATTTGT
TTTTAGGTAATTGTAAATCCCATCAATTGGCAATGATAGTCATCAAATGT
TCCTTTCATTAAAAAATGATATTTTTGCCATTTTTGGCTGTATACCAGTA
AAAGTGATAATCCTTTTACTTTTTTTTTGATCCAAATCAATTTCATAATT
TTGCTTCTAACTGTAATAGACTGATCATCTGCTACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no536_d22.b1 MSMg01no536_d22.b1 CHROMAT_FILE:
MSMg01no536_d22.b1 PHD_FILE: MSMg01no536_d22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:14:17 2005
         (655 letters)



>mm_chr12_62185934_62186988
          Length = 1055

 Score =  932 bits (482), Expect = 0.0
 Identities = 491/494 (99%)
 Strand = Plus / Minus

                                                                        
Query: 162  gtctacagaaatgcaagggcaaagatgcagcaaaggccaagggaatagctaaccaataac 221
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1055 gtctacagaaatgcaagggcaaagatgcagcaaaggccaagggaatagctaaccaataac 996

                                                                        
Query: 222  tgatccaacttgaaacccatccaatggcaggcaccaattcctgacactattaatgatact 281
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 995  tgatccaacttgaaacccatccaatggcaggcaccaattcctgacactattaatgatact 936

                                                                        
Query: 282  ctgttatgcttgcaaaaaggagcctattaggcttttagtatattttgtaatttaaaatat 341
            |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 935  ctgttatgcttgcaaaaaggagcctattaggcttttagtatattttataatttaaaatat 876

                                                                        
Query: 342  ttggaaataaatttaaaaatcaagcataaggaatgctttactccaaactatctcacaaca 401
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 875  ttggaaataaatttaaaaatcaagcataaggaatgctttactccaaactatctcacaaca 816

                                                                        
Query: 402  tataatcttccatatgtatatattttatcaataaagagttattactagcagagttcttca 461
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 815  tataatcttccatatgtatatattttatcaataaagagttattactagcagagttcttca 756

                                                                        
Query: 462  gaatcatgatgtcctagtaactagtgaagtatgtagcaaataatcatatttatatatgca 521
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755  gaatcatgatgtcctagtaactagtgaagtatgtagcaaataatcatatttatatatgca 696

                                                                        
Query: 522  tatgaatgtataaataatacataagcattattaactagttacatactgaaacagataata 581
            ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 695  tatgaatgtataaataatatataagcattattaactagttacatactgaaacagataata 636

                                                                        
Query: 582  tacaatgggacactttcattgagatggaatacaatgaaacaaaaagaactctgcagagct 641
            ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 635  tacaatgggacactttcattgagatggaatacaatgaaacaaaaagaactctggagagct 576

                          
Query: 642  atttggattaacaa 655
            ||||||||||||||
Sbjct: 575  atttggattaacaa 562


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 655
Length of database: 1055
Length adjustment: 10
Effective length of query: 645
Effective length of database: 1045
Effective search space:   674025
Effective search space used:   674025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no536_d22.g1 MSMg01no536_d22.g1 CHROMAT_FILE:
MSMg01no536_d22.g1 PHD_FILE: MSMg01no536_d22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:14:17 2005
         (540 letters)



>mm_chr12_62075838_62076777
          Length = 940

 Score = 1029 bits (532), Expect = 0.0
 Identities = 538/540 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aacatcttctcatgtaccagaacaagttgctgcattggtacttctcttttctggtgtgct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aacatcttctcatgtaccagaacaagttgctgcattggtacttctcttttctggtgtgct 260

                                                                       
Query: 61  gagttcaaaagtgcaagaggtccctttccattcctctttgcagtataaacatttgtcact 120
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gagttcaaaagtgcaagaagtccctttccattcctctttgcagtataaacatttgtcact 320

                                                                       
Query: 121 gcctcagttgagagtcccctcatgaccactttctcagactttcaaatgtatgcaaaattc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcctcagttgagagtcccctcatgaccactttctcagactttcaaatgtatgcaaaattc 380

                                                                       
Query: 181 ttacgcatgtgggtaaaactcatttcttttcccttctgtattagtaatatatgtgctgtt 240
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttacgcatatgggtaaaactcatttcttttcccttctgtattagtaatatatgtgctgtt 440

                                                                       
Query: 241 ggtataaaatatcttacaggagcaacttaaaagggaagcctattttgctgttagtcctgt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggtataaaatatcttacaggagcaacttaaaagggaagcctattttgctgttagtcctgt 500

                                                                       
Query: 301 atacagtccacaatgtctgtgaagtcatgggaacaggagcttgaggaagctgggcacatt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atacagtccacaatgtctgtgaagtcatgggaacaggagcttgaggaagctgggcacatt 560

                                                                       
Query: 361 gcttttactgttaaacttgtttttcattttgattaaggctgggtctccatcacatggaat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gcttttactgttaaacttgtttttcattttgattaaggctgggtctccatcacatggaat 620

                                                                       
Query: 421 ggcataacccaaattagagtgtgtctttccacctccattagccaaatttaatactttctc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ggcataacccaaattagagtgtgtctttccacctccattagccaaatttaatactttctc 680

                                                                       
Query: 481 gtggagatttgtttttaggtaattgtaaatcccatcaattggcaatgatagtcatcaaat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gtggagatttgtttttaggtaattgtaaatcccatcaattggcaatgatagtcatcaaat 740


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 540
Length of database: 940
Length adjustment: 10
Effective length of query: 530
Effective length of database: 930
Effective search space:   492900
Effective search space used:   492900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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