Query= MSMg01no536_h08.b1 MSMg01no536_h08.b1 CHROMAT_FILE:
MSMg01no536_h08.b1 PHD_FILE: MSMg01no536_h08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:14:34 2005
(614 letters)
>mm_chr12_95296705_95297718
Length = 1014
Score = 830 bits (429), Expect = 0.0
Identities = 462/473 (97%)
Strand = Plus / Minus
Query: 142 attccactaactgtgctatcacatagcccctgacgggagagctggtggtggaacactcgg 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 814 attccactaactgtgctatcacatagcccctgacgggagagctggtggtggaacactcgg 755
Query: 202 atgttgctgtccggagcatagagtttcagttggtctgggttagagatttgtgggtgtgca 261
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 754 atattgctctccggagcatagagtttcagttggtctgggttagagatttgtgggtgtgca 695
Query: 262 gaaggctaaccatgcgatgtcacagagatttagaatattcaaatcactgatggggacatt 321
|| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 694 gagggctaaccatgcgatgtcacagagattcagaatattcaaatcactgatggggacatt 635
Query: 322 tgtaggaatcttcctgtccccttatacagggtcttccccagactgttttcctgtccaacg 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 tgtaggaatcttcctgtccccttatacagggtcttccccagactgttttcctgtccaacg 575
Query: 382 ctacagaccaccaacttcaaagtggagtttgaggttaatatggtggtccttcttcatgct 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 ctacagaccaccaacttcaaagtggagtttgaggttaatatggtggtccttcttcatgct 515
Query: 442 gaccacctaccccatcactgagaagttctcgctgaaactctgtcagacatagtccagcgg 501
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 514 gaccacctacctcatcactgagaagttctcgctgaaactctgtcagacatagtccagggg 455
Query: 502 caggaaggggacagccagaacgtcagtccagtcatctgctcacacgggaacatcactcag 561
||||||||||||||||||||||||| |||||||||||||| |||||||||| ||||||||
Sbjct: 454 caggaaggggacagccagaacgtcaatccagtcatctgcttacacgggaacgtcactcag 395
Query: 562 gccacctgatcacaggcatcacgctagcctgtgatacatacatacatcttcat 614
|||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 394 gccacctgctcacaggcatcacgttagcctgtgatacatacatacatcttcat 342
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 614
Length of database: 1014
Length adjustment: 10
Effective length of query: 604
Effective length of database: 1004
Effective search space: 606416
Effective search space used: 606416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no536_h08.g1 MSMg01no536_h08.g1 CHROMAT_FILE:
MSMg01no536_h08.g1 PHD_FILE: MSMg01no536_h08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:14:34 2005
(549 letters)
>mm_chr12_95098323_95099271
Length = 949
Score = 1002 bits (518), Expect = 0.0
Identities = 538/546 (98%), Gaps = 4/546 (0%)
Strand = Plus / Plus
Query: 4 ctggtaagatactagctcaggatagtggtacattttaacagggcattgtcatctgtttct 63
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 ctggtaagatactagctcgggatagtggtacattttaacagggcattgtcatctgtttct 259
Query: 64 gaacagctaatgatctctttaatatctgtggcgaat--cacacacacacacacagacaca 121
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 260 gaacagctaatgatctctttaatatctgtggcgaatcacacacacacacacacagacaca 319
Query: 122 cagacacacacacaaacacacacacacatacagacacacacac--agaaattactggcag 179
|||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct: 320 cagacacacagacaaacacacacacacacacagacacacacacatagaaattactggcag 379
Query: 180 tggtgaactttctttctttggatggtatattttgagtcttttaatcataataaaatcata 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tggtgaactttctttctttggatggtatattttgagtcttttaatcataataaaatcata 439
Query: 240 gataattaaaatcattagattttttttctgtggcagatatatttctttgccctttagttt 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gataattaaaatcattagattttttttctgtggcagatatatttctttgccctttagttt 499
Query: 300 tctattttctttttttataataaattaaattaaccaacacaaatggggaatgttgattga 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tctattttctttttttataataaattaaattaaccaacacaaatggggaatgttgattga 559
Query: 360 agttgctaacacataaaccctgtgggtaagtgttggttgtggttttgtcttaaacttgtg 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 agttgctaacacataaaccctgtgggtaagtgttggttgtggttttgtcttaaacttgtg 619
Query: 420 acctgtgtatttgtttcctatgaggacatgggcagaagcctcccctcttggacctcttct 479
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 620 acctgtgtatttgtttcctatgaggacacgggcagaagcctcccctcttggacctcttct 679
Query: 480 gagtttgttatgcccacccttttactttatgcatacttaagaaatctctctctctctctc 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 gagtttgttatgcccacccttttactttatgcatacttaagaaatctctctctctctctc 739
Query: 540 tttttt 545
||||||
Sbjct: 740 tttttt 745
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 549
Length of database: 949
Length adjustment: 10
Effective length of query: 539
Effective length of database: 939
Effective search space: 506121
Effective search space used: 506121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
