BAC Information

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BAC

Clone NameMSMg01-536I16
Chromosome12 (Build37)
Map Location 68,510,361 - 68,510,824
singlet/doubletsinglet
Overlap genenone
Upstream geneMdga2
Downstream geneLOC100040745, LOC100040681
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-536I16.T7 (MSMg01no536_i16.b1)MSMg01-536I16.TJ (MSMg01no536_i16.g1)
ACCAG603729AG603730
length781800
length of high quality
(start - end)		573 (74 - 646)537 (78 - 614)
definitionCHROMAT_FILE: MSMg01no536_i16.b1 PHD_FILE: MSMg01no536_i16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:14:41 2005CHROMAT_FILE: MSMg01no536_i16.g1 PHD_FILE: MSMg01no536_i16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:14:41 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCAGATGCTTTCCAATATTGACCCAAACCTGAAGATCCAATTT
TTTGAGGATATTTGTGAAAGTATTGGTATGGACCAATTTGCTATTGTAAA
CTCTTGCTGAAATTTTATAACTTTTGAATTTATATTTTATATGTTTTAAA
TTCTTATATGTACTTTGGCCTTACATACTCCAATTTCAGACATAAATCTC
CTGATAAAGAAGGCCAACACTGCATGTACAGGGAGAAGGGGATACTGAGA
GGGCCTGGGGATGCACTTCAGTGGTACAGTGTTTGCCTCACATGCTTACA
ACTTTGAATTTAACCCCTAGCATCACCATAAAGAAAGAAGTAAGAAAGAG
GAGGAAAAAAGTTTGAGACTAAGTCATGCTAGTTAAGAATGGGCCCATAT
CACTTAATTTCCAAATATTGTAAACGTAGCTTGTTTCACCTATGAGTGTG
AGCTGAACTGACAGGTCACAAAACCTAATACAATCATATGAATGCAGAGG
CTTACTAATTTTTCTACTTAGGATGAGTGAGACTCAAAACAGTCCTCATT
CCTGTTATTTTTATAATCTTCCATCACAACACATTGTATCACATGCACAA
AACCACCACCAGAGTATACATGGAAGTCTTCATAAATTCTTTATGCTTCT
GATTATTTTGATTCCACTGCTAAATATCACTCAGAAAATCACCCGAATAT
AAGCTTACGAAAGAAAACAGAGACCCTTAAT

NCCAATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXACTGTTTGTTAAATAATAGATTG
ATTATATTTGTTCTTTTTTCTATATTTGTATTGAAATGCATCTGAGATCC
TCCCCACCTCTCTCCCTATCCAAATCTCTATTTCTCTGTAGAAAACAGAT
GGTCATCTAAAGAATAATAATAATAAAATAAAACAGAACAAAATAAATCA
GAATAGAAAAACAACCAAACAGACAAACACAATAAAAAAGATCCTTCCCC
AAAAGCAGAAGATATATATATGTGTGTGTGTGTGTGTGTGTATGCAGAAA
CATGAATGTTCATACACCATAGAGGAATCACAACAAAACAGGAAACTGGA
AACTGTAATATATAATATAAACTGAAAACGCTCTGAAGAGTGTTTTGTAT
CCCTAGAGAGACTCTCTTAGAGAACTTTTTTTCTGAGCTTTATCTATTAG
AAATAGCTGCTGTGTTAGGATAGGTTAGGGATTGTGTCCATTTCTCTGGG
CACTAGAACCCTACCTGCCCCAGACTTGTACAACCCCTCAGATGCTGTCT
CAGTCTCTTTGAGTTCATGTGTGTGTCAGTCTTGCTGAGTTCAGAAAGCC
TAGTTGTCGTCCACCCCCTCTGGTTATCACAATCTTTCTGCGTCTTCTTC
CCCAGGGCTCCTTGATATCCTGAAGGGAGGGATTTGATGGGAACATCCTA
TTTAAGGTTGAATGTTCCCAGACCCAACCTCTCTGTACATTAACTGCCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no536_i16.b1 MSMg01no536_i16.b1 CHROMAT_FILE:
MSMg01no536_i16.b1 PHD_FILE: MSMg01no536_i16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:14:41 2005
         (573 letters)



>mm_chr12_68509852_68510824
          Length = 973

 Score =  890 bits (460), Expect = 0.0
 Identities = 463/464 (99%)
 Strand = Plus / Minus

                                                                       
Query: 110 tattttatatgttttaaattcttatatgtactttggccttacatactccaatttcagaca 169
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 973 tattttatatgttttaaattcttatatgtactttggccttacatactccaatttcagaca 914

                                                                       
Query: 170 taaatctcctgataaagaaggccaacactgcatgtacagggagaaggggatactgagagg 229
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 913 taaatctcctgataaagaaggccaacactgcatgtacagggagaaggggatactgagagg 854

                                                                       
Query: 230 gcctggggatgcacttcagtggtacagtgtttgcctcacatgcttacaactttgaattta 289
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 853 gcctggggatgcacttcagtggtacagtgtttgcctcacatgcttacaactttgaattta 794

                                                                       
Query: 290 acccctagcatcaccataaagaaagaagtaagaaagaggaggaaaaaagtttgagactaa 349
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 793 acccctagcatcaccataaagaaagaagtaagaaagaggaggaaaaaagtttgagactaa 734

                                                                       
Query: 350 gtcatgctagttaagaatgggcccatatcacttaatttccaaatattgtaaacgtagctt 409
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 733 gtcatgctagttaagaatgggcccatatcacttaatttccaaatattgtaaacgtggctt 674

                                                                       
Query: 410 gtttcacctatgagtgtgagctgaactgacaggtcacaaaacctaatacaatcatatgaa 469
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 gtttcacctatgagtgtgagctgaactgacaggtcacaaaacctaatacaatcatatgaa 614

                                                                       
Query: 470 tgcagaggcttactaatttttctacttaggatgagtgagactcaaaacagtcctcattcc 529
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 tgcagaggcttactaatttttctacttaggatgagtgagactcaaaacagtcctcattcc 554

                                                       
Query: 530 tgttatttttataatcttccatcacaacacattgtatcacatgc 573
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 tgttatttttataatcttccatcacaacacattgtatcacatgc 510


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 573
Length of database: 973
Length adjustment: 10
Effective length of query: 563
Effective length of database: 963
Effective search space:   542169
Effective search space used:   542169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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