Query= MSMg01no536_k19.b1 MSMg01no536_k19.b1 CHROMAT_FILE:
MSMg01no536_k19.b1 PHD_FILE: MSMg01no536_k19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:14:51 2005
(523 letters)
>mm_chr12_76677158_76678080
Length = 923
Score = 982 bits (508), Expect = 0.0
Identities = 517/520 (99%)
Strand = Plus / Minus
Query: 4 ggaattcaactcattcatttaaaatattgtgttgagtcctatgatggactggacattgtt 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 ggaattcaactcattcatttaaaatattgtgttgagtcctatgatggactggacattgtt 481
Query: 64 ctggaaatgcagtggtaagcaaaacagcacgggtctttgctcttgcaagtgatctataat 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 ctggaaatgcagtggtaagcaaaacagcacgggtctttgctcttgcaagtgatctataat 421
Query: 124 gattagttcaaacagaactctgacagtgatgagttctattggaaaacaaaggggcttctt 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 gattagttcaaacagaactctgacagtgatgagttctattggaaaacaaaggggcttctt 361
Query: 184 ggaggaagtaaagtttatgccgagctttaaagatggaggtagattttgagattcttttcc 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 ggaggaagtaaagtttatgccgagctttaaagatggaggtagattttgagattcttttcc 301
Query: 244 tttgagataggatctcataatttacaatgatgcggaagctggtcttgaacttcgatcctc 303
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 300 tttgagataggatctcataatttacaatgatgcagaagctggtcttgaacttcgatcctc 241
Query: 304 ttgcctccactcctaactgttgggattatagtcatatattaccacaccaggctgggattt 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 ttgcctccactcctaactgttgggattatagtcatatattaccacaccaggctgggattt 181
Query: 364 gtcttctgaaaatgccattaggaacagaaatcacattggcgaaattattaaaggtgtcag 423
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 ttcttctgaaaatgccattaggaacagaaatcacattggcgaaattattaaaggtgtcag 121
Query: 424 gagccaagtcatctagactacagagtttgtccttttcctcaaggtagttgtatgcccaca 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120 gagccaagtcatctagactacagagtttgtccttttcctcaaggtagttgtatgcccaca 61
Query: 484 aaatacataactcacctatagacctgtctctgtagacaga 523
|||||||||| |||||||||||||||||||||||||||||
Sbjct: 60 aaatacataattcacctatagacctgtctctgtagacaga 21
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 523
Length of database: 923
Length adjustment: 10
Effective length of query: 513
Effective length of database: 913
Effective search space: 468369
Effective search space used: 468369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no536_k19.g1 MSMg01no536_k19.g1 CHROMAT_FILE:
MSMg01no536_k19.g1 PHD_FILE: MSMg01no536_k19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:14:51 2005
(495 letters)
>mm_chr12_76509572_76510466
Length = 895
Score = 890 bits (460), Expect = 0.0
Identities = 488/498 (97%), Gaps = 3/498 (0%)
Strand = Plus / Plus
Query: 1 ccggatctcactggccagccagcctaatgagtgggctgcaggttcagagagggatctctc 60
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 198 ccggatctcactggccagccagcctaatgagtgggctgcaggttcagagagagatctctc 257
Query: 61 atggaacaagatcaacagctccagagaaatgacatcagaggctgacctctggcatt--ca 118
||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct: 258 atggaacaagatcaacagctccagagaaatgacatcagaggcttacctctggcattcgca 317
Query: 119 c-acagaggtgtgttgtgtgttcacgtgcaagcaaacacacatgagaattcataaatgtg 177
| ||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 318 caacacaggtgtgttgtgtgttcacatgcaagcaaacacacatgagaattcataaatgtg 377
Query: 178 aagttgtataaatagtaacaatatttgcaccctcatttccaaaacagtgtgttgtacaaa 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 aagttgtataaatagtaacaatatttgcaccctcatttccaaaacagtgtgttgtacaaa 437
Query: 238 atcaaagtttaaataagtatttatggaaaagaaggcagtggaatggagagaagggaaaga 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 atcaaagtttaaataagtatttatggaaaagaaggcagtggaatggagagaagggaaaga 497
Query: 298 cactattataaatcctagcagatattttcctccttttccttggtaactttcctgactgta 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 cactattataaatcctagcagatattttcctccttttccttggtaactttcctgactgta 557
Query: 358 atatatatttgttgcagtttttaatcccatgggctagcatctccactgtcttttgggcgg 417
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 atacatatttgttgcagtttttaatcccatgggctagcatctccactgtcttttgggcgg 617
Query: 418 taccacacactctgcaggtcacaggcatcattgttgtcctgctgtctgccatgggagtaa 477
||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct: 618 taccacacactctgcaggtcacaggcaacattgttgttctgctgtctgccatgggagtaa 677
Query: 478 tgtcctctctgtctctga 495
||||||||||||||||||
Sbjct: 678 tgtcctctctgtctctga 695
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 495
Length of database: 895
Length adjustment: 10
Effective length of query: 485
Effective length of database: 885
Effective search space: 429225
Effective search space used: 429225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
