Query= MSMg01no536_l18.b1 MSMg01no536_l18.b1 CHROMAT_FILE:
MSMg01no536_l18.b1 PHD_FILE: MSMg01no536_l18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:14:55 2005
(531 letters)
>mm_chr12_47283904_47284839
Length = 936
Score = 961 bits (497), Expect = 0.0
Identities = 523/535 (97%), Gaps = 7/535 (1%)
Strand = Plus / Plus
Query: 4 ggaattctcctccacgtggatcctgtatggtttactactgtttgaagtgttaataatctc 63
|||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 204 ggaagtctcctccacgtggatcctgtatggtttactactgtttgaagtcttaataatctc 263
Query: 64 atcacttcaatgcaccactaataatgaggctctcaatgttaatgaaactatgctgattga 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 atcacttcaatgcaccactaataatgaggctctcaatgttaatgaaactatgctgattga 323
Query: 124 atcactaatatttaattgaatactgcaaacattcctgttataaattgtattggacatatt 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 atcactaatatttaattgaatactgcaaacattcctgttataaattgtattggacatatt 383
Query: 184 ctttagaact-----agatctgagattcaagtatatatatttgcagctccaggtggactg 238
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ctttagaacttcactagatctgagattcaagtatatatatttgcagctccaggtggactg 443
Query: 239 cactactagccccttactcagatttccttggatccacagatataaaaaaacaacacacac 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 cactactagccccttactcagatttccttggatccacagatataaaaaaacaacacacac 503
Query: 299 aca--tttaggtaatcttaatatgcctttgatagcttaatgactgggcattcttaaacct 356
||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 504 acacatttaggtaatcttaatatgcctttgatagcttaatgactgggcactcttaaacct 563
Query: 357 ccctgccaccccaggcttaatcaggtagagtagttattggtcacttcaaccaaaatctca 416
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 564 ccctgccaccccaggcttaattgggtagagtagttattggtcacttcaaccaaaatctca 623
Query: 417 cgtgactggtatactggctagttttgtgtcaacttgacacagctggagttatcacagaga 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 cgtgactggtatactggctagttttgtgtcaacttgacacagctggagttatcacagaga 683
Query: 477 aaggagcttcagttgaggaaatgcctccatgagatccaactgtaaggcactttct 531
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 aaggagcttcagttgaggaaatgcctccatgagatccaactgtaaggcactttct 738
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 531
Length of database: 936
Length adjustment: 10
Effective length of query: 521
Effective length of database: 926
Effective search space: 482446
Effective search space used: 482446
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no536_l18.g1 MSMg01no536_l18.g1 CHROMAT_FILE:
MSMg01no536_l18.g1 PHD_FILE: MSMg01no536_l18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:14:56 2005
(506 letters)
>mm_chr12_47466593_47467499
Length = 907
Score = 888 bits (459), Expect = 0.0
Identities = 495/509 (97%), Gaps = 5/509 (0%)
Strand = Plus / Minus
Query: 1 agaaaggtgtgaactaagtcagaccttgtctttctagcaccagcttcatgtccataggcc 60
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 707 agaaaggtgtgaactaagtcagaccttgtctttctagcacccgcttcatgtccataggcc 648
Query: 61 tctaataaaaaataacaactgagttta---ttttttttatgtgtagatctgtagatatga 117
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct: 647 tctaataaaaaataacaactgagtttatttttttttttatgtgtagatctgtagatgtga 588
Query: 118 atgtgtggttctttcaaggacattctaatcagaaagaaaaaaaatgaggatttcccgaaa 177
|| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 587 atatgtggttctttcaaggacattctaatcagaaag--aaaaaatgaggatttcccgaaa 530
Query: 178 agaaaagaaaacacctaagtaccaagccaggagcacatttaagtagtaaccaaagccttt 237
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct: 529 agaaaagaaaacacctaagtaccaagtcaggagcacatttaagtagtaaccaaagccctt 470
Query: 238 taaatatctagaaaatttaataactgaaaaacaaagcagatcattatggaattagaggga 297
|||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 taaataactagaaactttaataactgaaaaacaaagcagatcattatggaattagaggga 410
Query: 298 atattaagattgacatagcctgacctcagttttccttgcctcacaataacttgccttcat 357
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 atattaggattgacatagcctgacctcagttttccttgcctcacaataacttgccttcat 350
Query: 358 ttcaaaatcaagaacacactttctcttaataggtattacctaaaactagttccggtggtt 417
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 349 ttcaaaatcaagaacacactttctcttaataggtattacctaaaactagttccagtggtt 290
Query: 418 ttctgatcaatagataaagggtggcatatatctatatgtataaatagatatagatgatat 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 ttctgatcaatagataaagggtggcatatatctatatgtataaatagatatagatgatat 230
Query: 478 agagatagagatatatttactttcccatt 506
|||||||||||||||||||||||||||||
Sbjct: 229 agagatagagatatatttactttcccatt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 506
Length of database: 907
Length adjustment: 10
Effective length of query: 496
Effective length of database: 897
Effective search space: 444912
Effective search space used: 444912
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
