Query= MSMg01no536_l22.b1 MSMg01no536_l22.b1 CHROMAT_FILE:
MSMg01no536_l22.b1 PHD_FILE: MSMg01no536_l22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:14:56 2005
(573 letters)
>mm_chr12_48792594_48793566
Length = 973
Score = 1004 bits (519), Expect = 0.0
Identities = 557/571 (97%), Gaps = 7/571 (1%)
Strand = Plus / Plus
Query: 5 gaattccacattgggaggatattgagcataggaaaactgaaagaccacttgcaaagtgtt 64
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct: 208 gaattccacattgggaggatattgagcataggaaaactgaaag---acttgtaaagtgtt 264
Query: 65 ttacctcctccaacaaagccacagctcttctagaagggccacatctcctaagagtgccat 124
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 265 ttacctcctccaacaaagccacagctcttctaaaagggccacatctcctaagagtgccat 324
Query: 125 ccctat-ggtcaagcattcaaatacataaatctttggggagccaaacctattcaaaccac 183
||| || ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 325 ccc-attggtcaagcattcaaatatataaatctttggggagccaaacctattcaaaccac 383
Query: 184 caaaataatcttgttaagcatggaaatgcagcagatttgacttgtatttgccagaattta 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 caaaataatcttgttaagcatggaaatgcagcagatttgacttgtatttgccagaattta 443
Query: 244 acaaggtttttgaaatataacaca-agctcatattctaaagatgaatgcataagacttta 302
||||||||||||||| |||||||| | |||||||||||||||||||||||||||||||||
Sbjct: 444 acaaggtttttgaaaaataacacaca-ctcatattctaaagatgaatgcataagacttta 502
Query: 303 aagaagtatgttgcatacacagatatgaagtgtataataagtgtacctcagaaatacagt 362
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 aagaagtatattgcatacacagatatgaagtgtataataagtgtacctcagaaatacagt 562
Query: 363 atctgcagcttagaataaaatgtcctctctctagaagtaataatgtcataacttaccacc 422
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 563 atctgcagcttagaataaaatgtcctctctctagaagtaataatgtcatagcttaccacc 622
Query: 423 ccaacatttcttccctttacctcctatcttatctactcatatgcacacagaaacacatga 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 ccaacatttcttccctttacctcctatcttatctactcatatgcacacagaaacacatga 682
Query: 483 acatacatagttagcaaaaaggtgcattaaatgtctagtgtgcttaattatcaacaatca 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 acatacatagttagcaaaaaggtgcattaaatgtctagtgtgcttaattatcaacaatca 742
Query: 543 aattctcatttgagatttattcctctaaaga 573
|||||||||||||||||||||||| ||||||
Sbjct: 743 aattctcatttgagatttattcctttaaaga 773
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 573
Length of database: 973
Length adjustment: 10
Effective length of query: 563
Effective length of database: 963
Effective search space: 542169
Effective search space used: 542169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no536_l22.g1 MSMg01no536_l22.g1 CHROMAT_FILE:
MSMg01no536_l22.g1 PHD_FILE: MSMg01no536_l22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:14:56 2005
(515 letters)
>mm_chr12_48951854_48952769
Length = 916
Score = 733 bits (379), Expect = 0.0
Identities = 433/479 (90%), Gaps = 43/479 (8%)
Strand = Plus / Minus
Query: 80 tgatcctgggagtgttagagtgcttggaagtggatcttcccctgggtgttaagggactag 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 916 tgatcctgggagtgttagagtgcttggaagtggatcttcccctgggtgttaagggactag 857
Query: 140 ctgtggagttcaagcccacacattttttattatatataaatattgactatctcctttaga 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 856 ctgtggagttcaagcccacacattttttattatatataaatattgactatctcctttaga 797
Query: 200 atttcttccatataactcaattctttaattactaggttaaaaaaaa-------------- 245
||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 796 atttcttccatataactcaattctttaattactaggtaaaaaaaaaaaaaaacaaaaaac 737
Query: 246 -----------------------------acaatatttaaagtactatgtagtggttagt 276
|||||||||||||||||||||||||||||||
Sbjct: 736 aaaaaacaaaaaacaaaacaaaaaaaaacacaatatttaaagtactatgtagtggttagt 677
Query: 277 gaggctaaaagtagatatcctctaaatttttcagtacaggacaattattttgtaaaacgt 336
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 676 gaggctaaaagtagatatcctctaaatttttcagtacaggacaattattttgtaaaatgt 617
Query: 337 gcttagaaatcactttgagaaagagaatttttgaagcttgggcaggggctatgaagtgca 396
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 gcttagaaatcactttgagaaagagaatttttgaagcttgggcaggggctatgaagtgca 557
Query: 397 acatgcagtgttttagtaattattttgactagaatcaagacatgtatttataaaatcaca 456
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 556 acatgcagtgttttagtaattattttgactagaatcacgacatgtatttataaaatcaca 497
Query: 457 atgataagcctcaacaatatttttttaatataagaaagggagtaaaaataaaaagggcc 515
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 atgataagcctcaacaatatttttttaatataagaaagggagtaaaaataaaaagggcc 438
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 515
Length of database: 916
Length adjustment: 10
Effective length of query: 505
Effective length of database: 906
Effective search space: 457530
Effective search space used: 457530
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
