Query= MSMg01no537_d08.b1 MSMg01no537_d08.b1 CHROMAT_FILE:
MSMg01no537_d08.b1 PHD_FILE: MSMg01no537_d08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:15:31 2005
(708 letters)
>mm_chr12_63296416_63297523
Length = 1108
Score = 835 bits (432), Expect = 0.0
Identities = 458/476 (96%), Gaps = 15/476 (3%)
Strand = Plus / Minus
Query: 233 agcaaatgcctccagaatgactgtttttgctctggatttctttaagtgttcatagttttt 292
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1108 agcaaatgcctccagaatgactgtttttgctctggatttctttaagtgttcatagtttt- 1050
Query: 293 tgttgttgttgttgttgttgttgttgttgttgttttatttccttgtgaatggtaacattg 352
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1049 --------------ttgttgttgttgttgttgttttatttccttgtgaatggtaacattg 1004
Query: 353 tttattgtttgtttgtttgattgatttctatttctgtgaagaatagaatgaggattttga 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1003 tttattgtttgtttgtttgattgatttctatttctgtgaagaatagaatgaggattttga 944
Query: 413 ctgggatgaattgagtctgtagtttcttctggtagaaaatttcagattagtaacatgaaa 472
||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 943 ctgggttgaattgagtctgtagtttcttctggtagaaaaattcagattagtaacatgaaa 884
Query: 473 tcacactttattgttacccatctatattctatgagacgttttgtttgcacccatatagaa 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 883 tcacactttattgttacccatctatattctatgagacgttttgtttgcacccatatagaa 824
Query: 533 catattatgaaataataatcacacttgttaaaataatatgcaaaaacgaatgaaggtatt 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 823 catattatgaaataataatcacacttgttaaaataatatgcaaaaacgaatgaaggtatt 764
Query: 593 ttcaagatactatagaatacatcatatttcttaatcataaaatagtgcataaatcataca 652
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 763 ttcaagatactatagaatacatcatatttcttaatcataaaatagtgcataaatcataca 704
Query: 653 tagattgtagtacatatgtatgcatgcatttatatatttacatgtaagttttgtgt 708
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 703 tagattgtaatacatatgtatgcatgcatttatatatttacatgtaagttttgtgt 648
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 708
Length of database: 1108
Length adjustment: 10
Effective length of query: 698
Effective length of database: 1098
Effective search space: 766404
Effective search space used: 766404
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no537_d08.g1 MSMg01no537_d08.g1 CHROMAT_FILE:
MSMg01no537_d08.g1 PHD_FILE: MSMg01no537_d08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:15:31 2005
(675 letters)
>mm_chr12_63074512_63075588
Length = 1077
Score = 1266 bits (655), Expect = 0.0
Identities = 671/677 (99%), Gaps = 2/677 (0%)
Strand = Plus / Plus
Query: 1 tatgtgaaataaaccaataaataagttaataattaaattcaagaaatttattttaatata 60
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tatgtgaaatgaaccaataaataagttaataattaaattcaagaaatttattttaatata 260
Query: 61 aactaataaaattattttcactcaggtacacactgcaattagttcttgacttttctcaga 120
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 261 tactaataaaattattttcacttaggtacacactgcaattagttcttgacttttctcaga 320
Query: 121 taaattcatattcatatattttacagatcattacataaactttgactttctttttgtgaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taaattcatattcatatattttacagatcattacataaactttgactttctttttgtgaa 380
Query: 181 gaaattttataacatttattcaattagttgtatataaaatatacctttaagagtattctt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaaattttataacatttattcaattagttgtatataaaatatacctttaagagtattctt 440
Query: 241 tcatatttaaccacttgatatttaagtagataggctttctctgtaggtctgagtataatt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcatatttaaccacttgatatttaagtagataggctttctctgtaggtctgagtataatt 500
Query: 301 tatgatctagcattaagaatttaagaagttatatcatttgaactaagaggaatggaattt 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tatgatctagcattaagaatttaagaagttatatcatttgaactaagaggaatggaattg 560
Query: 361 tcatattgttttcatctcctggtttgatataagcagtaaatttttctcacaatttatgag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcatattgttttcatctcctggtttgatataagcagtaaatttttctcacaatttatgag 620
Query: 421 tcataattgagaatttaaaattgtatttcaataactaatttatataatacgatattttgg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tcataattgagaatttaaaattgtatttcaataactaatttatataatacgatattttgg 680
Query: 481 tttacatatacaatgtgatatatatata--ccacataaggtcaaattgcagcagtaggga 538
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 681 tttacatatacaatgtgatatatatatataccacataaggtcaaattgcagcagtaggga 740
Query: 539 atcaaagcaggataacttgtacatttgaaaatacatagggagttctaggccagccagaac 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 atcaaagcaggataacttgtacatttgaaaatacatagggagttctaggccagccagaac 800
Query: 599 tatacatgtcttcatatatggttattttattttcaatcatatcttcaaatttaataaatg 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tatacatgtcttcatatatggttattttattttcaatcatatcttcaaatttaataaatg 860
Query: 659 ggtatttaggtaggtat 675
|||||||||||||||||
Sbjct: 861 ggtatttaggtaggtat 877
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 675
Length of database: 1077
Length adjustment: 10
Effective length of query: 665
Effective length of database: 1067
Effective search space: 709555
Effective search space used: 709555
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
