BAC Information

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BAC

Clone NameMSMg01-537H06
Chromosome12 (Build37)
Map Location 89,980,408 - 89,981,083
singlet/doubletsinglet
Overlap geneLOC100039261
Upstream geneLOC100042239, LOC100042786, BB287469, LOC100038964, LOC673658, LOC100038992, LOC100038982, LOC674027, LOC100039042, LOC100039052, LOC100039076, LOC100039087, LOC100039100, LOC100039191, LOC100039203, LOC627873, LOC100039162, LOC627881, LOC100039129, LOC636517, LOC544884, LOC100039226, LOC432715, EG667350, LOC546543, EG667388, LOC627971, LOC667395, LOC100039315, EG638008, EG666862, EG435337, LOC100039154, LOC633093, LOC667440, LOC100039383, EG266459, LOC667475, LOC620915, LOC435314, Adck1
Downstream geneEG666915, Nrxn3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-537H06.T7 (MSMg01no537_h06.b1)MSMg01-537H06.TJ (MSMg01no537_h06.g1)
ACCAG604422AG604423
length749757
length of high quality
(start - end)		624 (48 - 671)676 (78 - 753)
definitionCHROMAT_FILE: MSMg01no537_h06.b1 PHD_FILE: MSMg01no537_h06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:15:49 2005CHROMAT_FILE: MSMg01no537_h06.g1 PHD_FILE: MSMg01no537_h06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:15:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AACTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTTTGCCTATACTAAGGGCAGAGACTCTTTTACTCTGTTTTCTT
CTACAAGTTTTTAGTCTAGTTTGTCTTGTAATCAATTTTAAGTTCGTTTC
TGTTTCTAGTGTAAGGCAAATTTCAAGGTTTAATTTTTTTTCTTTGTGGG
TATTCAATTGTTCTAGCAGCTTTTGGGAATCTTTTCCTATTGGATTGCCT
GGCCATCTTTGTCAAAAATCAATTGACCATAGATGAGTGGGTTTATTTCT
GGACTCTTTATTCTGTTCCATTGATCCATATGTCTCCACTCTGTTAATAG
CACACTGTCCTTATTACTGTAGCTTTATAGTAAATCTTAGAATAGTATAG
TTCTTACATTATTTTAGGATGTAGTGTAGGAGGAGATAGTCCTAGTCCTC
CAGATTTGTTACTCTTTCTCAAAGCCATTTGAGTTATTTTAAGTCCAAAA
CATTTACATATAGATTTTATTATCGGCTCATCAACTTTTGCTTTAAAAAG
ACCTGTTGGCTCTGTGATTGAGATTACACTGAAGTTCTGCCTGCTGAAAA
GCATTGACACATCAGTATTGACAGAGACCACTAAGAGATAGACATCACAC
ATACCTTCATTAATTTATGTCTTTCAGTCTTTTTAGATATTTTCACAATA
TTTTATTTTTTCATTGTGTGGAGTTTACATATTTTTACTAATTTATCCA

NCCGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCTCTGCAAATGTTGGCTCAGTG
CTCACTACTGAGAGGTTCAATGCAGGAACAAAACAATGTAGCCACCCTAG
GGGCATGAGGTCCTATTTAGGTGGGACTATGAACAATGACAACAGACACA
CATGCAACATGTGTCAGGTACTGTTAGGCCTGTAGAAAATTAAAATGAAG
AAGAAAGTGCTGTGGAGGGAAGTGCTACTCCAAAAAGTGAATTTGGGGAA
ACCTAGCCAAAGGAAGCTTAATTATAAACAGACCTAGGGAAGCCCAGCTT
GGGCCTGGAACATCCAGGACAAAGAAGGCTGGAGGCAGGAATGGGTTTAG
AAACTTCAAGGAGCAACAAAACCACGAGTGTGACCAAAGTAGATCAAGCA
AGGAGAGTGGAAGGAGGGGCGGGAAAAGGGCTGACATACTTGGAGCAGAA
CGAGAAGGATCCTGGAGACCCTGCAGCTCATCTAGGCTTCGAGTAGGATG
ACTTTGAAAATTCTAAGATGAGTGACATATAAGAGATTCATTTTGAAACC
CCTCCAGGGCTAGAAAAAAAATGGATCAGTAGGTATGGGTCCTTACTCCA
AAGCCTGATGACCTATGTTGTATCCTAAGAATCTACACAGTGAAAGGGGA
GAATCGACTCCCACAGGCTGATTTCTGATTGCTGCATATTTATAGGCATG
TGCACAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no537_h06.g1 MSMg01no537_h06.g1 CHROMAT_FILE:
MSMg01no537_h06.g1 PHD_FILE: MSMg01no537_h06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:15:49 2005
         (676 letters)



>mm_chr12_89980343_89981418
          Length = 1076

 Score = 1261 bits (652), Expect = 0.0
 Identities = 670/676 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctctgcaaatgttggctcagtgctcactactgagaggttcaatgcaggaacaaaacaat 60
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tctctgcagatgttggctcagtgctcactactgagaggttcaatgcaggaacaaaacaat 682

                                                                       
Query: 61  gtagccaccctaggggcatgaggtcctatttaggtgggactatgaacaatgacaacagac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gtagccaccctaggggcatgaggtcctatttaggtgggactatgaacaatgacaacagac 622

                                                                       
Query: 121 acacatgcaacatgtgtcaggtactgttaggcctgtagaaaattaaaatgaagaagaaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 acacatgcaacatgtgtcaggtactgttaggcctgtagaaaattaaaatgaagaagaaag 562

                                                                       
Query: 181 tgctgtggagggaagtgctactccaaaaagtgaatttggggaaacctagccaaaggaagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgctgtggagggaagtgctactccaaaaagtgaatttggggaaacctagccaaaggaagc 502

                                                                       
Query: 241 ttaattataaacagacctagggaagcccagcttgggcctggaacatccaggacaaagaag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttaattataaacagacctagggaagcccagcttgggcctggaacatccaggacaaagaag 442

                                                                       
Query: 301 gctggaggcaggaatgggtttagaaacttcaaggagcaacaaaaccacgagtgtgaccaa 360
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 441 gctggaggcaggaatgggtttagaaacttcaaggagcaacaaaaccactagtgtgaccaa 382

                                                                       
Query: 361 agtagatcaagcaaggagagtggaaggaggggcgggaaaagggctgacatacttggagca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 381 agtagatcaagcaaggagagtggaaggaggggcgggaaaagggctgacacacttggagca 322

                                                                       
Query: 421 gaacgagaaggatcctggagaccctgcagctcatctaggcttcgagtaggatgactttga 480
           ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaacgagaaggatcctgcaggccctgcagctcatctaggcttcgagtaggatgactttga 262

                                                                       
Query: 481 aaattctaagatgagtgacatataagagattcattttgaaacccctccagggctagaaaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaattctaagatgagtgacatataagagattcattttgaaacccctccagggctagaaaa 202

                                                                       
Query: 541 aaaatggatcagtaggtatgggtccttactccaaagcctgatgacctatgttgtatccta 600
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaaatggatcagtagatatgggtccttactccaaagcctgatgacctatgttgtatccta 142

                                                                       
Query: 601 agaatctacacagtgaaaggggagaatcgactcccacaggctgatttctgattgctgcat 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141 agaatctacacagtgaaaggggagaatcgactcccacaggctgatttctgattgctgcat 82

                           
Query: 661 atttataggcatgtgc 676
           ||||||||||||||||
Sbjct: 81  atttataggcatgtgc 66


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 676
Length of database: 1076
Length adjustment: 10
Effective length of query: 666
Effective length of database: 1066
Effective search space:   709956
Effective search space used:   709956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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