Query= MSMg01no537_l15.b1 MSMg01no537_l15.b1 CHROMAT_FILE:
MSMg01no537_l15.b1 PHD_FILE: MSMg01no537_l15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:16:10 2005
(596 letters)
>mm_chr12_66120077_66121070
Length = 994
Score = 1044 bits (540), Expect = 0.0
Identities = 579/602 (96%), Gaps = 19/602 (3%)
Strand = Plus / Plus
Query: 5 gaattccaagaatccacgcatctatgctgcagccacaaatgttgttcacgcactgagtca 64
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 gaattccaagaatccaggcatctatgctgcagccacaaatgttgttcacgcactgagtca 254
Query: 65 acatgtaggtaaggaatcctaaattggtactcacatttttttgatgtcactttcatgctt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 acatgtaggtaaggaatcctaaattggtactcacatttttttgatgtcactttcatgctt 314
Query: 125 tctgaaccgatgtatttttatatgttgaaataagtaatatttttcatttaatag------ 178
|||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 tctgaacccatgtatttttatatgttgaaataagtaatatttttcatttaatagcattta 374
Query: 179 ----tgtatctgaaactttttcataaattatttaagtgatgaaatatttaaattgattat 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 atagtgtatctgaaactttttcataaattatttaagtgatgaaatatttaaattgattat 434
Query: 235 ctttttcattggatgctcgtttttttaacctcatattcatgagattaaaatggattatag 294
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 ctttttcattggatgttcgtttttttaacctcatattcatgagattaaaatggattatag 494
Query: 295 atttaaatataaaatattacatgcttttggggcataacatggaaattatgtcatggcatt 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 atttaaatataaaatattacatgcttttggggcataacatggaaattatgtcatggcatt 554
Query: 355 ataatgtaataaagctttagaatcattttgaaagaatgatctatgcatgtcagtaaactg 414
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 555 ataatgtaataaagctttagaatcattttgaaagaatgatctatgcat-tcagtaaactg 613
Query: 415 gatttctgtaactttaattgttgcatggacctctattttttttttttttttttccttaag 474
|||||||||||||| |||||||||||| |||||| |||||||||||||||||||
Sbjct: 614 gatttctgtaactt-aattgttgcatgaacctct-------ttttttttttttccttaag 665
Query: 475 acagggttttttggctgtcctggaatttactctgtagacaatgctggccctgaactcccg 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 acagggttttttggctgtcctggaatttactctgtagacaatgctggccctgaactcccg 725
Query: 535 actgcctctgcctcctgagtgcaccatactacctgacttgatattttcctataattatat 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 actgcctctgcctcctgagtgcaccatactacctgacttgatattttcctataattatat 785
Query: 595 ga 596
||
Sbjct: 786 ga 787
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 596
Length of database: 994
Length adjustment: 10
Effective length of query: 586
Effective length of database: 984
Effective search space: 576624
Effective search space used: 576624
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no537_l15.g1 MSMg01no537_l15.g1 CHROMAT_FILE:
MSMg01no537_l15.g1 PHD_FILE: MSMg01no537_l15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:16:10 2005
(627 letters)
>mm_chr12_66255128_66256154
Length = 1027
Score = 1158 bits (599), Expect = 0.0
Identities = 602/603 (99%)
Strand = Plus / Minus
Query: 25 ttgtaattagattaataatgctgttattgttgtgatagctaagagtacagaatgaatact 84
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1027 ttgtaattagattaataatgctgttattgttgtgatagctaagagtacagaatgaatact 968
Query: 85 tcctttttgaagtggagagtgacatcaagattgcatctcactatgaagccctcgttggca 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 967 tcctttttgaagtggagagtgacatcaagattgcatctcactatgaagccctcgttggca 908
Query: 145 tggaacttagtatgtagaacaagctggtctcaaacctagagcacacctcctgcttttata 204
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 907 tggaacttagtatgtagaacaagctggtctcaaacctagagcactcctcctgcttttata 848
Query: 205 tacaaggtgttgagattacacataactggctcacacccagtccttcattataagtttgta 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 847 tacaaggtgttgagattacacataactggctcacacccagtccttcattataagtttgta 788
Query: 265 tgcttctatgtgtatatacagttcctagtaaagtataaatactttgaccttattaaactt 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 787 tgcttctatgtgtatatacagttcctagtaaagtataaatactttgaccttattaaactt 728
Query: 325 attcttttccccccctagagatatgactgatgtttattggcatagcaatgtaattataga 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 attcttttccccccctagagatatgactgatgtttattggcatagcaatgtaattataga 668
Query: 385 gcggattaaacacaatgaacttaggaccttatcaggcaacatttatatcttaaaaggatt 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 gcggattaaacacaatgaacttaggaccttatcaggcaacatttatatcttaaaaggatt 608
Query: 445 gatagactcggtctccatgaaagaagcaggtaagtgggcatcattattagttaaatcttt 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 gatagactcggtctccatgaaagaagcaggtaagtgggcatcattattagttaaatcttt 548
Query: 505 ctatagcctctcctctttcctaaataaatcccaggatcataaattgacccgaccccttgt 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 ctatagcctctcctctttcctaaataaatcccaggatcataaattgacccgaccccttgt 488
Query: 565 agtgtcccacacaatcacgacttttattactcatttcagtatatgcctagtactgactct 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 agtgtcccacacaatcacgacttttattactcatttcagtatatgcctagtactgactct 428
Query: 625 tca 627
|||
Sbjct: 427 tca 425
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 627
Length of database: 1027
Length adjustment: 10
Effective length of query: 617
Effective length of database: 1017
Effective search space: 627489
Effective search space used: 627489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
