BAC Information

Click to search

BAC

Clone NameMSMg01-538B23
Chromosome12 (Build37)
Map Location 115,225,214 - 115,361,399
singlet/doubletdoublet
Overlap geneIgh, Ighv14-2, Ighv4-2, Ighv3-2, Ighv11-2, Ighv14-3, EG629812, Ighv6-2, Ighv9-1, Ighv12-1, EG629818
Upstream geneBrf1, Pacs2, Tex22, Mta1, Crip2, Crip1, 4930427A07Rik, LOC676349, Tmem121, Igh-2, Gm900, Igh-1b, Igh-3, Ighg1, AI324046, LOC668370, LOC668375, EG382645, Igh-5, Igh-6, Ighj4, Ighj3, Ighj2, Ighj1, Ighd4-1, Ighd3-2, Ighd5-6, Ighd2-8, Ighd5-5, Ighd2-7, Ighd5-8, Ighd5-4, Ighd2-6, Ighd5-7, Ighd5-3, Ighd2-5, Ighd5-2, Ighd2-4, Ighd6-2, Ighd2-3, Ighd6-1, Ighd1-1, 4930523C11Rik, Ighd3-1, Ighd5-1, Adam6, Ighv5-1, Ighv2-1, Ighv5-2, Ighv2-2, Ighv5-3, Ighv5-4, Ighv6-1, Ighv2-3, Ighv5-5, Ighv5-6, Ankrd12-like, Ighv5-7, EG668389, Ighv5-8, Ighv5-9, Ighv5-10, Ighv2-5, Ighv5-11, Ighv5-12, Ighv2-6, Ighv5-9-1, EG628098, Ighv2-9-1, Ighv5-13, Ighv2-6-8, EG629785, Ighv2-7, LOC668405, Ighv5-15, Ighv5-16, Ighv5-17, Ighv5-18, Ighv2-8, Ighv2-9, Ighv5-19, Ighv7-1, Ighv7-2, Ighv14-1, Ighv4-1, Ighv3-1, Ighv11-1
Downstream geneIghv12-2, Ighv9-3, Ighv7-3, Ighv15-1, Ighv14-4, EG668438, Ighv7-4, EG629833, EG633457, Ighv13-1, Ighv3-6, EG636260, Ighv3-7, Ighv5-21, Ighv3-8, Ighv8-1, Ighv1-1, Ighv13-2, EG435321, Ighv6-3, EG628398, EG639510, Ighv6-6, EG432701, EG629849, Ighv1-2, Ighv10-1, Ighv1-3, Ighv1-4, Ighv10-2, EG668469, EG380809, Ighv1-6, EG668474, Ighv10-4, Ighv1-8, Ighv15-2, Ighv1-9, Ighv1-10, Ighv1-11, EG629860, Ighv1-13, Ighv1-14, Ighv1-15, EG629866, Ighv1-17-1, Ighv1-17, Ighv1-18, EG668493, Ighv1-19, EG668497, Ighv1-21-1, Ighv1-21, Ighv1-22, Ighv1-23, Ighv1-24, Ighv1-25, Ighv1-26, Ighv1-27, Ighv1-28, Ighv1-29, Ighv1-30, Ighv1-31, Ighv1-32, Ighv1-33, Ighv1-34, EG668515, Ighv1-36, Ighv1-37, Ighv1-38, Ighv1-39, Ighv1-40, Ighv1-41, EG629906, EG629908, Ighv1-44, Ighv1-45, Ighv1-46, Ighv1-47, Ighv8-3, EG629919, Ighv1-48, Ighv1-49, EG640506, Ighv1-50
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-538B23.T7 (MSMg01no538_b23.b1)MSMg01-538B23.TJ (MSMg01no538_b23.g1)
ACCAG604928AG604929
length743738
length of high quality
(start - end)		684 (35 - 718)616 (68 - 683)
definitionCHROMAT_FILE: MSMg01no538_b23.b1 PHD_FILE: MSMg01no538_b23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:16:42 2005CHROMAT_FILE: MSMg01no538_b23.g1 PHD_FILE: MSMg01no538_b23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:16:42 2005
singlet/doubletdoubletdoublet
BLAST hitpluralunique
Map location.(115,225,214 - 115,225,905)(115,360,963 - 115,361,399)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATTTCT
TTATGAACAGAAAAATTAACACTTAACTTCTTTTACTATACCCAACATTA
CTTTGTCTGATATTCCAAAATAATCAACTTTTATAAGCTTAGAAAACGAA
CAACTCTAATTGAAGTTATTTTCTCTTCCATGCTCCTGATTAATGAATGC
ATATGTATTTGTTTTATGATAATCACTTGCTAAAAAGAAAAAAATAGGAT
TCAAAAACCTTACGAAACAAATATTAAAAATTGTTGAAAACACCATATCG
GTATTGTTTGATAAATAATGATGCTTGTAGTATTTTTTATTACTTGGGTC
AGTTGGATGAATAAAACTGAGCTAACGATACCTATAAAGTATTTTTCCAA
GGGGTATTTACTATGTTGTCCAATGCATACAGAGTCAAGTTCTTTGTTAA
GGGGAATACACATACACAGAGATAGCAGAGGAGAGGAGGGAGAGAAAGAG
AAAGAGACAAGAGACTCAAATACGTACAAGATACTAATAGGAAAAAGACA
CAGGGAGAATAAAATAGAGAATTCAAATCTGAGCTTGCCCTTTGTTAAAT
GATACAAAGTGACTTCTCATTTTGACTCTAAATTGCTTTCACTGTGGGGA
ATTCACCCATTTCTGAAGTTTCTGTACCTGCACAGAAGGAACAAAATTTA
CGTAAATGAATTGGAGTCGAAGAGTGATGAAGATAAACCCATC

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTTTACTGTCATGGTCGAGAGTGGATGCATAAAA
CCATATCCTACTTTTCAGGGTGGACCTGAGATTAAGTGATATCTGCAAGG
GGGAATGTCAGTGAAAAGAATCTTATTTGCAACACACTACAGCCTCTAGG
TCACCCAGTAGAATGAACATCATTCTCTGGAGCCTATGTGACCATAGGTC
ATTTCTCTTTTTTATTACATTGCTTTGGGAAGTTAGGGATGACACATCTA
CATGTAGAAGGTCTTGCAGCTGAGCCTTTATATGACTAATGGCCAAAAAT
CTATGAGGGCTGTGGCTATGTGACAGGGGCCTCATGTGCAGGATCAGGCA
AAATTCCTTTAGGGTCACCTGGGCTTCAAAGCCTTTATCTTAGACAAGGA
CCAGGCTACCTTGCAGGGTTCACAGCCCCACACATCATCACTGAAAAAAA
TCTTGATTTGCTTCCTAACCTAAACATATATTCCTGTATTTATATCATTT
GGAATTTGTACAAGTACTACATGAATATAATGTGTTTCGACTCCTTCCAA
TTCCTCTCCCACCTACTCATTAAGATTTCCTCCCAACTCTATGTGTGTTT
CTTTTTTTTTCTTTTTTTATGTTTCTTTTTTTAAAAAATAACTGACTTTA
ATCTATGATGACAGTGGGAATGTGGGCATACAACTATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no538_b23.b1 MSMg01no538_b23.b1 CHROMAT_FILE:
MSMg01no538_b23.b1 PHD_FILE: MSMg01no538_b23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:16:42 2005
         (684 letters)



>mm_chr12_115225022_115226105
          Length = 1084

 Score =  990 bits (512), Expect = 0.0
 Identities = 644/704 (91%), Gaps = 36/704 (5%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcatttctttatgaacag-aaaaattaacacttaacttcttttactatacccaaca 63
           ||||||||||||||||||| || ||| |||||||||||||||||||||||||||||||| 
Sbjct: 193 gaattcatttctttatgaatagcaaatattaacacttaacttcttttactatacccaacc 252

                                                                       
Query: 64  ttactttgtctgatattccaaaataatcaacttttataagcttagaaaacgaacaactct 123
           ||||||||||||| ||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct: 253 ttactttgtctgagattccgaaataatcaacttttataagcttagaaaacgcacaactct 312

                                                                       
Query: 124 aattgaagttattttctcttccatgctcctgattaatgaatgcatatgtatttgttttat 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 aattgaagttattttctcttccatgctcctgattaatgaatgcatatgtatttgttttat 372

                                                                       
Query: 184 gataatcacttgctaaaaagaaaaaaataggattcaaaaaccttacgaaacaaatattaa 243
           |||||||||||||||||||||||||||||||||| |||||||||| ||||||||||  ||
Sbjct: 373 gataatcacttgctaaaaagaaaaaaataggattaaaaaaccttatgaaacaaataccaa 432

                                                                       
Query: 244 aaattgttgaaaacaccatatcggtattgtttgataaataatgatgcttgtagtattttt 303
           ||||||||||||| ||||||| ||||||| ||||||||||||| || |||||||||||||
Sbjct: 433 aaattgttgaaaataccatatgggtattggttgataaataatg-tgtttgtagtattttt 491

                                                                       
Query: 304 tattacttgggtcagttggatga----------at---------aaaactgagctaacga 344
           |||||||||||||||||||||||          ||         |||||| |||||||||
Sbjct: 492 tattacttgggtcagttggatgagtaaaaaggaatcacccttttaaaactaagctaacga 551

                                                                       
Query: 345 tacctataaagtatttttccaaggggtatttactatgttgtccaatgcatacagagtcaa 404
           |||||||||||||||||||||  |||||||||||||||||||||||||||||||||| ||
Sbjct: 552 tacctataaagtatttttcca--gggtatttactatgttgtccaatgcatacagagtaaa 609

                                                                       
Query: 405 gttctttgttaaggggaatacacatacacagagatagcagaggagag-gagggagagaaa 463
           ||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||
Sbjct: 610 gttctttgttaaggggaatacacatacacagagatagcagagggg-gtgagggagagaaa 668

                                                                       
Query: 464 gagaaagagacaagagactcaaatacgtacaagatactaataggaaaaa--gacacaggg 521
           ||||      |||||||| ||||||||| |||||||||||| |||||||  |||||||||
Sbjct: 669 gaga------caagagac-caaatacgtgcaagatactaattggaaaaaaagacacaggg 721

                                                                       
Query: 522 agaataaaatagagaattcaaatctgagcttgccctttgttaaa-tgatacaaagtgact 580
           ||||| ||||||||||||||||||||| |||||||||| ||||| ||||| |||||||||
Sbjct: 722 agaatgaaatagagaattcaaatctgaacttgcccttt-ttaaaatgatataaagtgact 780

                                                                       
Query: 581 tctcattttgactctaaattgctttcactgtggggaattcacccatttctgaagtttctg 640
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tctcattttgactctaaattgctttcactgtggggaattcacccatttctgaagtttctg 840

                                                       
Query: 641 tacctgcacagaaggaacaaaatttacgtaaatgaattggagtc 684
           |||||||||||||||||||||| ||| |||||||||||||||||
Sbjct: 841 tacctgcacagaaggaacaaaagttatgtaaatgaattggagtc 884


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 684
Length of database: 1084
Length adjustment: 10
Effective length of query: 674
Effective length of database: 1074
Effective search space:   723876
Effective search space used:   723876
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no538_b23.g1 MSMg01no538_b23.g1 CHROMAT_FILE:
MSMg01no538_b23.g1 PHD_FILE: MSMg01no538_b23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:16:42 2005
         (616 letters)



>mm_chr12_115360384_115361399
          Length = 1016

 Score =  845 bits (437), Expect = 0.0
 Identities = 437/437 (100%)
 Strand = Plus / Minus

                                                                        
Query: 180  ggtcatttctcttttttattacattgctttgggaagttagggatgacacatctacatgta 239
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1016 ggtcatttctcttttttattacattgctttgggaagttagggatgacacatctacatgta 957

                                                                        
Query: 240  gaaggtcttgcagctgagcctttatatgactaatggccaaaaatctatgagggctgtggc 299
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 956  gaaggtcttgcagctgagcctttatatgactaatggccaaaaatctatgagggctgtggc 897

                                                                        
Query: 300  tatgtgacaggggcctcatgtgcaggatcaggcaaaattcctttagggtcacctgggctt 359
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 896  tatgtgacaggggcctcatgtgcaggatcaggcaaaattcctttagggtcacctgggctt 837

                                                                        
Query: 360  caaagcctttatcttagacaaggaccaggctaccttgcagggttcacagccccacacatc 419
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 836  caaagcctttatcttagacaaggaccaggctaccttgcagggttcacagccccacacatc 777

                                                                        
Query: 420  atcactgaaaaaaatcttgatttgcttcctaacctaaacatatattcctgtatttatatc 479
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 776  atcactgaaaaaaatcttgatttgcttcctaacctaaacatatattcctgtatttatatc 717

                                                                        
Query: 480  atttggaatttgtacaagtactacatgaatataatgtgtttcgactccttccaattcctc 539
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 716  atttggaatttgtacaagtactacatgaatataatgtgtttcgactccttccaattcctc 657

                                                                        
Query: 540  tcccacctactcattaagatttcctcccaactctatgtgtgtttctttttttttcttttt 599
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656  tcccacctactcattaagatttcctcccaactctatgtgtgtttctttttttttcttttt 597

                             
Query: 600  ttatgtttcttttttta 616
            |||||||||||||||||
Sbjct: 596  ttatgtttcttttttta 580


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 616
Length of database: 1016
Length adjustment: 10
Effective length of query: 606
Effective length of database: 1006
Effective search space:   609636
Effective search space used:   609636
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |