Query= MSMg01no538_g16.b1 MSMg01no538_g16.b1 CHROMAT_FILE:
MSMg01no538_g16.b1 PHD_FILE: MSMg01no538_g16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:17:03 2005
(691 letters)
>mm_chr12_69270451_69271539
Length = 1089
Score = 1183 bits (612), Expect = 0.0
Identities = 666/686 (97%), Gaps = 8/686 (1%)
Strand = Plus / Plus
Query: 5 gaattcccacagtcc--aggtcaaagacaaaaatcagtcttctaatagagccaagttttt 62
|||||||||||| | ||| |||||||||||||| || |||||||||||||||||||||
Sbjct: 205 gaattcccacag--caaaggccaaagacaaaaatcggttttctaatagagccaagttttt 262
Query: 63 cgaaagacggtagatacttccttattaaccagatttggcaattgggaaaaagtctaggta 122
|||||||| ||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct: 263 cgaaagactgtagatacttccttactaagcagatttggcaattgggaaaaagtctaggta 322
Query: 123 cttccatttttaatatagaggaaagaacttaatttcaactctgtgggtgtttgaacacaa 182
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 323 cttccatttttaatatagaggaaagaacttaatttcaattctgtgggtgtttgaacacaa 382
Query: 183 aggaaggaacacttatatcaggagacacaactgctaagttacagctctggttacccagag 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 aggaaggaacacttatatcaggagacacaactgctaagttacagctctggttacccagag 442
Query: 243 cagcctcatatctctaacttcttgccaaccatgtctcaaacaccataatttaaaaactaa 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 cagcctcatatctctaacttcttgccaaccatgtctcaaacaccataatttaaaaactaa 502
Query: 303 tatgaaagaagatagaaagataggcttgggggcgtagctcatacagcaaacttgcaagca 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 tatgaaagaagatagaaagataggcttgggggcgtagctcatacagcaaacttgcaagca 562
Query: 363 tcaggagctcgggtaaatgagcaccatggttaaaaaaaaaaagtgctacgggtgtgtgtt 422
|||||||||||||||||||||| ||||||||||||||||| ||||||| |||| |||||
Sbjct: 563 tcaggagctcgggtaaatgagcgccatggttaaaaaaaaa--gtgctacaggtgagtgtt 620
Query: 423 atcactgctgaacaggcaaagacaggaagacctttgggaattgatggacagctcaactag 482
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 621 atcactgctgaacaggcaaagacaggaagatctttgggaattgatggacagctcaactag 680
Query: 483 aaaatcagcaaattgtagattaatagagagtctttcaaaaacaaggggactgggggaatt 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aaaatcagcaaattgtagattaatagagagtctttcaaaaacaaggggactgggggaatt 740
Query: 543 aaaagcacacacctttaatcctagtacttgtgactcagaagtgagcagatccatgtgagt 602
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aaa-gcacacacctttaatcctagtacttgtgactcagaagtgagcagatccatgtgagt 799
Query: 603 ctgaggcccccatgatttacgtagtaaagttcatgccaggcatggctacaaagtacaacc 662
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 800 ctgaggcccccatgatttacgtagtaaagttcatgccaggcatggctacaaagtacagcc 859
Query: 663 ttgtcttaaaat-aaaaaaaaaaaaa 687
|||||||||||| |||||||||||||
Sbjct: 860 ttgtcttaaaatcaaaaaaaaaaaaa 885
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 691
Length of database: 1089
Length adjustment: 10
Effective length of query: 681
Effective length of database: 1079
Effective search space: 734799
Effective search space used: 734799
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no538_g16.g1 MSMg01no538_g16.g1 CHROMAT_FILE:
MSMg01no538_g16.g1 PHD_FILE: MSMg01no538_g16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:17:04 2005
(615 letters)
>mm_chr12_69434724_69435736
Length = 1013
Score = 1011 bits (523), Expect = 0.0
Identities = 536/541 (99%), Gaps = 2/541 (0%)
Strand = Plus / Minus
Query: 75 taaaagtacgtccttcattaataagggctttgtgctatttcaagaatgcatattgattta 134
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1013 taaaaatacgtccttcattaataagggctttgtgctatttcaagaatgcatattgattta 954
Query: 135 gggaagaaaatactacattaagtttaatctgcctgttcatagttttctgccattagtgtg 194
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 953 gggaagaaaatactacattaagtttaatctgcctgttcatagttttctgccattagtgtg 894
Query: 195 acagtaatggtttaaatttttttttataaaaataagttggtaattcttttcaaggaaaat 254
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 893 acagtaatggtttaaatttttttttataaaaataagttggtaattcttttcaaggaaaat 834
Query: 255 atataaatattaaaaatatagaaatttgctttattttgactttcacatactattgcaatt 314
|||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct: 833 atataaatattaaaaatatagaaatttgttttattttgactttcacatactatagcaatt 774
Query: 315 tcaagtgacattttgataatttctttaccagtttttctgctattttgtagttacctaatt 374
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 773 tcaagtgacattttgataatttctttaccagtttttctgctattttgtagttacctaatt 714
Query: 375 gtgttttgaaaaagccattgtcactgatgatttaattttgataagtgtgttatgcttttt 434
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 713 gtgttttgaaaaagccattgtcactgatgatttaattttgataagtgtgttatgcttttt 654
Query: 435 atagcaatgtagtagaagcattgggaaattaatatattttaacatttctgtgagagaaag 494
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 atagcaatgtagtagaagcattgggaaattaatatattttaacatttctgtgagagaaag 594
Query: 495 atgtaatttataatgaagtaaattttgctgttattggtgtgtgtgtgtgtgtttgcatgt 554
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 593 atgtaatttataatgaagtaaattttgctgttattg--gtgtgtgtgtgtgtttgcatgt 536
Query: 555 atgtagtgtttaatacagtattaccaaataaaaatatcattttggcacaggataaatatt 614
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 atgtagtgtttaatacagtattaccaaataaaaatatcattttggcacaggataaatatt 476
Query: 615 a 615
|
Sbjct: 475 a 475
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 615
Length of database: 1013
Length adjustment: 10
Effective length of query: 605
Effective length of database: 1003
Effective search space: 606815
Effective search space used: 606815
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
