XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTGTT
TAGCTATGTGCCCCATTATTTGATTTGTTGGAGTCCATCTTCTTGAGTTC
TTTATATATATTGAATATTAGTCCCCTATCTGATTTAGGATTGGTAAAGA
TCGTTTTACATTCTGTTGGTGGCCTTTTTGTCTTATTGACAGTGTCTTTT
GCCTTACAGAAGCTTTGCAATTTTATGAGGTCCCATTTATCGATTCTTGA
TCTTAAAGCACAAGCCATTGCTGTTCTATTCAGGCTTTTTCCCCCTGTGC
CCATATCTTCGAGGCTTTTCCCCACTTTCTCCTCTATAAGTTTCAGTGTC
TCTGGTTTTATGTGGAGTTCCTTGATCCATGTAGATTTGACCTTAGTACA
AGGAGATAAGAATGGATCAACTCACATTCTTCTACATGAATGTAGTTGTG
CCAGCACCATTTGTTGAAAATGCTGTCTTTTTTCCACTGGATGGTTTTAG
CTCCCTTGTCAAGTGACAATCGGTGTGTGGGTTCATTTCTGGGTCTTCAA
TTCTATTCCATTCTATTCTACCTGTCTGTTTCTGTCACAGTACCATGCAG
GTTTTTTTTTTTCCACAATTGCTCTGTAGAACAGCTTTAGGACTGGCATG
GTGATTCCACTAGAGATTCTTTTATCATTGAGAAGAGATTTTTGCTAGGG
TTTTGGTTATTCCAGATGAATTTGCCAATTGCCCTTTCTAAATCC

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXACCTACATATTTGATATTATCTACAAGATCATTTAT
TACCTTCCAAAAATCCAAGGTGACTGTCATTTATGTCCTTCACATCTCTC
TTTCCTTTCTCCTGGGCCCGTTTTATTTGTAACTTCAAAAGTATCTTACC
TTAAATATTCTAATTTCCCCCAAAGCTGATGTTTTTCCCCCCTTTGGAAA
TGCATACTTTATTAAAAATATTCAGACTTGAAGTGGTATGAAATGAGATT
AGTAATGCCATGTTTCTAAGGTTGTTTTATTCATGTTTTACATAATAATG
TTGAGTCAAACAATAGATAATGTTATCTTCTATACACATATAACTTTATG
GTAATCATCATTAAATACAGGTCGTGCTAAGCTAATGGTCTATTCAGCCC
TTGAAATAAATGAAATATTTTTTGAAGGGACTTTGATGTGAAAGAATTAA
AACAATGTACGCTCTACTTGAAAAGAATTATCAGATACTTTTCAGCTTAT
CCATTAATACGATAGTGGGGATTGTATAATAGGAGGCTTCTAAACAAAAA
GATGGTATGCTTTTCTCTGAAAAACTGCCCACACCCACTGACCAGGTCAA
TCCTAATTCCTCTTTGTTTTCCCTTCAAGGAATCTGATGTCACCAGGTTA
TTTCAGAATGTGGCTAAATTTATCAAGGATTTACTCATTTTAAATGAAN

Query= MSMg01no538_h13.g1 MSMg01no538_h13.g1 CHROMAT_FILE:
MSMg01no538_h13.g1 PHD_FILE: MSMg01no538_h13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:17:08 2005
         (509 letters)



>mm_chr12_39814292_39815204
          Length = 913

 Score =  891 bits (461), Expect = 0.0
 Identities = 498/513 (97%), Gaps = 8/513 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   acctacatatttgatattatctacaagatcatttattaccttccaaaaatccaaggtgac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 711 acctacatatttgatattatctacaagatcatttattaccttccaaaaatccaaggtgac 652

                                                                       
Query: 61  tgtcatttatgtccttcacatctctctttcctttctcctgggcccgttttatttgtaact 120
           |||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct: 651 tgtcatttatgtccttcacatctctctttcctttct-ctgggcccattttatttgtaact 593

                                                                       
Query: 121 tcaaaagtatcttaccttaaatattctaatttcccccaaagctgatg---tttttc---c 174
           |||||||||||||||||||||||||||||||||||||||||||||||   ||||||   |
Sbjct: 592 tcaaaagtatcttaccttaaatattctaatttcccccaaagctgatgttttttttctttc 533

                                                                       
Query: 175 cccctttggaaatgcatactttattaaaaatattcagacttgaagtggtatgaaatgaga 234
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 cccctttggaaatgcatactttattaaaaatattcagacttgaagtggtatgaaatgaga 473

                                                                       
Query: 235 ttagtaatgccatgtttctaaggttgttttattcatgttttacataataatgttgagtca 294
           ||||||||| |||||||||||| ||||||||||||||||||||||||||| ||| |||||
Sbjct: 472 ttagtaatgtcatgtttctaagattgttttattcatgttttacataataaagttcagtca 413

                                                                       
Query: 295 aacaatagataatgttatcttctatacacatataactttatggtaatcatcattaaatac 354
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 aacaatagataatgttatcttctatacacatataactttatggtaatcatcattaaatac 353

                                                                       
Query: 355 aggtcgtgctaagctaatggtctattcagcccttgaaataaatgaaatattttttgaagg 414
           |||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 352 aggtcgtgctaaactaatggtctattcagcccttgaaataaatgaaata-tttttgaagg 294

                                                                       
Query: 415 gactttgatgtgaaagaattaaaacaatgtacgctctacttgaaaagaattatcagatac 474
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 gactttgatgtgaaagaattaaaacaatgtacgctctacttgaaaagaattatcagatac 234

                                            
Query: 475 ttttcagcttatccattaatacgatagtgggga 507
           ||||||| |||||||||||||||||||||||||
Sbjct: 233 ttttcagtttatccattaatacgatagtgggga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 509
Length of database: 913
Length adjustment: 10
Effective length of query: 499
Effective length of database: 903
Effective search space:   450597
Effective search space used:   450597
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)