Query= MSMg01no538_n04.b1 MSMg01no538_n04.b1 CHROMAT_FILE:
MSMg01no538_n04.b1 PHD_FILE: MSMg01no538_n04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:17:34 2005
(688 letters)
>mm_chr12_53982481_53983569
Length = 1089
Score = 1263 bits (653), Expect = 0.0
Identities = 677/685 (98%), Gaps = 1/685 (0%)
Strand = Plus / Plus
Query: 5 gaattcattaatttattagtgttccaatgactgtttaactatcagcaccgtgaaacaaat 64
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 205 gaattcattaatttattagtgttccaatgactgtttaactatcagcactgtgaaacaaat 264
Query: 65 ctgtgcctatttttatagatgatatacacttactgatgtttttgtttattcaaaataaag 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctgtgcctatttttatagatgatatacacttactgatgtttttgtttattcaaaataaag 324
Query: 125 atgccattgtagaaagtccatgtggggtttagaagacagtgggaatcaagatctgccttg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atgccattgtagaaagtccatgtggggtttagaagacagtgggaatcaagatctgccttg 384
Query: 185 ttctcctctactaagcttgccagtttctgcttgcagctagcactccttgctgttgtgact 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttctcctctactaagcttgccagtttctgcttgcagctagcactccttgctgttgtgact 444
Query: 245 gggactgtggggtgagactgggggcagtgttggctttcagatgccattgctccccatgcc 304
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 445 gggactgtggggtgagactgggggcagtgttggctttcagatgccatagctccccatgcc 504
Query: 305 cc-agagtgtgtggcgttcacggttactggaggctacaggttccagatgaccaccgttcc 363
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 cccagagtgtgtggcgttcacggttactggaggctacaggttccagatgaccaccgttcc 564
Query: 364 tatctaccacctctgaacatacaggctgatggaaatcagaaacttgtctacattctaaag 423
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 565 tatctaccacctctgaacatacaggttgatggaaatcagaaacttgtctacattctaaag 624
Query: 424 gggtctttcttcagacctgcccttgtcagctgctggaagggacatgaaaattaagttagt 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gggtctttcttcagacctgcccttgtcagctgctggaagggacatgaaaattaagttagt 684
Query: 484 cgattgccagttctttcttataggaatctgaagatacagcaatgttctgggacttattct 543
||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct: 685 cgattgccagttctttcttataggaatctgaagatacagcagtgtcctgggacttattct 744
Query: 544 tgatattgtatggattatattttgcatttgaacttattacatacataaagtagaaacaaa 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 tgatattgtatggattatattttgcatttgaacttattacatacataaagtagaaacaaa 804
Query: 604 aaaatggtgaaaggctattgactaattgctaatagctatttttttctctgacatcataaa 663
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 805 aaaatggcgaaaggctattgactaattgctaatagctatttttttctctgacgtcataaa 864
Query: 664 tttatatcatgtcgtatctgttctg 688
|||||||||||||||||||||||||
Sbjct: 865 tttatatcatgtcgtatctgttctg 889
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 688
Length of database: 1089
Length adjustment: 10
Effective length of query: 678
Effective length of database: 1079
Effective search space: 731562
Effective search space used: 731562
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no538_n04.g1 MSMg01no538_n04.g1 CHROMAT_FILE:
MSMg01no538_n04.g1 PHD_FILE: MSMg01no538_n04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:17:34 2005
(614 letters)
>mm_chr12_54077016_54078029
Length = 1014
Score = 1187 bits (614), Expect = 0.0
Identities = 614/614 (100%)
Strand = Plus / Minus
Query: 1 tttatatgattctaataaaatttgggtcacctcaagaagagagctacatataataaccat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 814 tttatatgattctaataaaatttgggtcacctcaagaagagagctacatataataaccat 755
Query: 61 aacttatttaaagtgatttacttattttcacatagtttttctatgttagcatgataaaac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 754 aacttatttaaagtgatttacttattttcacatagtttttctatgttagcatgataaaac 695
Query: 121 ttacagcatattgattcatatttataaaaataacaaaataatgattcatagtgaggaagc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 ttacagcatattgattcatatttataaaaataacaaaataatgattcatagtgaggaagc 635
Query: 181 atatctatagacttataaatgatgactacaaaatgaacacaaaaacataccagaatatat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 atatctatagacttataaatgatgactacaaaatgaacacaaaaacataccagaatatat 575
Query: 241 tgcgatctttcagttaatgccttagaaacataaagaaaattctagaaattcactgtaaac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 tgcgatctttcagttaatgccttagaaacataaagaaaattctagaaattcactgtaaac 515
Query: 301 ttagcaacagagttaaatgtaaaataagtttcagcgtgcattcctctggccagttggcat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 ttagcaacagagttaaatgtaaaataagtttcagcgtgcattcctctggccagttggcat 455
Query: 361 acatcatagaaagatgctgcagaataggttaaagagtctaaaaggattttaaccttaaat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 acatcatagaaagatgctgcagaataggttaaagagtctaaaaggattttaaccttaaat 395
Query: 421 ttgacagaagttaaatggctgtgacaccgggctccccggctttattccaactggtaatcc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 ttgacagaagttaaatggctgtgacaccgggctccccggctttattccaactggtaatcc 335
Query: 481 accctcaaagttcctgtcaggtaaatgaccttgtatttcattaactgataattaaatgga 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 accctcaaagttcctgtcaggtaaatgaccttgtatttcattaactgataattaaatgga 275
Query: 541 tttattccactaacggttttaattaaaatgctagaaatattgattacccctctcatcctt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 tttattccactaacggttttaattaaaatgctagaaatattgattacccctctcatcctt 215
Query: 601 attcccccagatga 614
||||||||||||||
Sbjct: 214 attcccccagatga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 614
Length of database: 1014
Length adjustment: 10
Effective length of query: 604
Effective length of database: 1004
Effective search space: 606416
Effective search space used: 606416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
