Query= MSMg01no539_a15.b1 MSMg01no539_a15.b1 CHROMAT_FILE:
MSMg01no539_a15.b1 PHD_FILE: MSMg01no539_a15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:17:50 2005
(263 letters)
>mm_chr12_95231419_95232083
Length = 665
Score = 464 bits (240), Expect = e-135
Identities = 258/264 (97%), Gaps = 2/264 (0%)
Strand = Plus / Plus
Query: 1 tgaaatattcagctgatgtatggaccacaataaacagattctgcttattttagaaattaa 60
||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct: 201 tgaaatattcagctgatgtatggactacaataaacagattctgcttatttcagaaattaa 260
Query: 61 aatgaatttattgg-tctcttttcatgtgtcacaatgacaatggtcaaattttgattaat 119
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatgaatttattggttctcttttcatgtgtcacaatgacaatggtcaaattttgattaat 320
Query: 120 cacaatctctctcattccagatttgcaacattgcacttgg-aaaaagaatgtgaagctga 178
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct: 321 cacaatctctctcattccagatttgcaacattgcacttggcaaaaagaatgtgaacctga 380
Query: 179 actcttgatctcagagagacttagagcatgaatggatgacatagagctctcaaagtctat 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 actcttgatctcagagagacttagagcatgaatggatgacatagagctctcaaagtctat 440
Query: 239 tcctgaaaccacaactttgtggaa 262
||||||| ||||||||||||||||
Sbjct: 441 tcctgaagccacaactttgtggaa 464
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 263
Length of database: 665
Length adjustment: 9
Effective length of query: 254
Effective length of database: 656
Effective search space: 166624
Effective search space used: 166624
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no539_a15.g1 MSMg01no539_a15.g1 CHROMAT_FILE:
MSMg01no539_a15.g1 PHD_FILE: MSMg01no539_a15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:17:50 2005
(650 letters)
>mm_chr12_95425021_95426066
Length = 1046
Score = 1145 bits (592), Expect = 0.0
Identities = 634/650 (97%), Gaps = 4/650 (0%)
Strand = Plus / Minus
Query: 1 aaacttctcagaataacagctcctatactgatttatattactgtcagacttcttgaaata 60
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct: 846 aaacttctcagaataacagctcctatgctgatttatattactgtcagacttctagaaata 787
Query: 61 ctgcaggttcctgtgccaccatgcctttcagagctagataaaaatttctagatgtgggat 120
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 786 ctgcaggttcctgtgccaccatgcctttcagagctagataaaaatttctaaatgtgggat 727
Query: 121 atgactatggcagttcttcagagctcctatttcccattatttatactaggttaggataaa 180
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 726 atgactatggcagttcttcagagctcctatttcccattatttttactaggttaggataaa 667
Query: 181 tgtctgtcacctctctccacacccccatggatagcactcactcctaataccccaagttct 240
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 666 tgtctgtcacctctctccacacccccatggatagcacccactcctaataccccaagttct 607
Query: 241 aatattaattgatgccttgttattcagagctagcattagatttctagagttgaaggaacc 300
||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct: 606 aatattaattgatgccttgttgttcagagctagcattagatttcaagagttgaaggaacc 547
Query: 301 ccctttaaggtacaattagaacttctggtcacagagtgtatattgagcatcctaaatgta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 ccctttaaggtacaattagaacttctggtcacagagtgtatattgagcatcctaaatgta 487
Query: 361 gtataaaaaactccagttccttactttcaaagttaatgctttggaataaagcatttaaca 420
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct: 486 gtataaaaaactccagtttcttacttttaaagttaatgctttggaataaagcatttaaca 427
Query: 421 tataattcctgtcattcatctttaaatgaaattatctgaattttccttatcattattcat 480
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 426 tataattcctgtcattcatctttaaatgaaattatctgaattttctttatcattattcat 367
Query: 481 gataaaaagcagcaattacagaggggactacagtagtaaaataaacagaagggctctgtc 540
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 366 gataaaaagcagcaattacagaggggactacagtagtaaaataaac----gggctctgtc 311
Query: 541 ctttgttcttagggagtttgtaatctacagatatttgtaggtgatttatgttaagaaata 600
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 ctttgttcttagggagttcgtaatctacagatatttgtaggtgatttatgttaagaaata 251
Query: 601 taacataacgttatatttacaatataatataacgttatgttatattagga 650
||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 taacataacattatatttacaatataatataacgttatgttatattagga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 650
Length of database: 1046
Length adjustment: 10
Effective length of query: 640
Effective length of database: 1036
Effective search space: 663040
Effective search space used: 663040
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
