NNNNCCCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXG
NCGCGGAATTCACAGAGTTTCCACCAGGTGCACATCTGCAGAGTAAATAG
AGGGCTAAAAGACTGGGTAGAAGATGTGGGCCTTGGGCTGAGAATGTACA
TAAGTTAGTCTAGTGCTTGCCTAGGCCCTAGGATAACCCCCTCCAGTACC
TCATAAACTATGTCTAGCGATGTCTCTAATCTTAGCACTTGGAATGTAGA
GAAGAAAAAAGATCTGAAGTTCAAAGTCATCTTTGGCTACACAGCCAGCT
TCTATGTAACAGTTGTGTAGCTTGGTCTTCATGCGGGACTCCTAACAGTA
GGAACAGGACTGTCCCTGACTCTGTTGCCTGCCTTGGGGACCCTTTCTGC
TAACTGGGCTGCCTTGTCTGGTCGAATAGAAATGCCTCATCTTACTACAA
CTTATATGCCAAGGCTGGTTGATATCCATGGGAGGCCTCCCCTTCTCTGA
AGAGAAAAGGAGGAGGAGTGGAGGGGGGAGGTGCTGGGAAAGGACTAGGA
GAAGTGGGAGGGGAAACTGTGATATTAATTAATTAAAAAAGCAAGCTTCG
GGCTGGAGAGATGGCTCAGCGGTTAAGAGCACTGACTACTCTTCTGAAGG
TCCTGAATTCAAATCCCAGCAACCACATGGTGGTTCACAACCATCTGTAA
TGAGATCTTACGCCCTCTTCTGGAGTGTCTGAAGACAGN

CTTTCCCCATTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAAGCTCTCAAATAAAGA
TGCAAAAGATAGCAACAGATAATGGGCTGAAAAGTGTAATAACTGTGAAG
ATGCACAATGTGTGGCGTGGTACTTAACCAGTTAGTGTCTGTAGAATTAT
AGTTCTGCCAGTGTCTGGTGACTGAAGCTCTGCAGTTATCAGATGGACAG
CCATTGTGGAGCCCAGGACATGGGTCCTCTGCGTACAGTCTACAGTCTAA
ACAGAGAGGCTCCCGGTGACTTATGCTCGCTCTCACTGGAGTGTTGAGTC
CTTGCTTTCACTGTTTTCTATAATGATCCTGTATATCAGGGGAAAATAGC
TTCTATAAATGGTGATCAAACCTCTAACTTTATTAATCCATTCCTTTGGA
ATTGGGGTATTAAGAAATGTTCTTAGAGATACAGGAACTACTCATGTGCA
AATAAATCATTCATTATAACAAAAACAGAAATATACATATATTCTGTTTG
GCTTATAGCTTGGATCTAATTTTGTTACAAACATAAGTAAAGCTGCTGAC
CATTTTTTTGTCTTTGTACCCCTGCAAGTTTGAGGGTGAGGCCTTACATT
TCCTGTATATCCCCAAAGGAAGACACCTTTCTTCTTTTCCTAANTGTATT
AAGTTAAAGTGCCCATGTGACAGTCACCATGTTTTCCTTTC

Query= MSMg01no539_j04.g1 MSMg01no539_j04.g1 CHROMAT_FILE:
MSMg01no539_j04.g1 PHD_FILE: MSMg01no539_j04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:18:35 2005
         (498 letters)



>mm_chr12_8256367_8257270
          Length = 904

 Score =  868 bits (449), Expect = 0.0
 Identities = 492/519 (94%), Gaps = 21/519 (4%)
 Strand = Plus / Plus

                                                                       
Query: 1   taagctctcaaataaagatgcaaaagatagcaacagataatgggctgaaaagtgtaataa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | 
Sbjct: 201 taagctctcaaataaagatgcaaaagatagcaacagataatgggctgaaaagtgtaacag 260

                                                                       
Query: 61  ctgtgaagatgcacaatgtgtggcgtggtacttaaccagttagtgtctgtagaattatag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgtgaagatgcacaatgtgtggcgtggtacttaaccagttagtgtctgtagaattatag 320

                                                                       
Query: 121 ttctgccagtgtctggtgactgaagctctgcagttatcagatggacagccattgtggagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttctgccagtgtctggtgactgaagctctgcagttatcagatggacagccattgtggagc 380

                                                                       
Query: 181 ccaggacatgggtcctctgcgtacagtctacagtctaaacagagaggctcccggtgactt 240
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 381 ccaggacatgggtcctctgcgtacagtctacagtctgaacagagaggctcccggtgactt 440

                                                                       
Query: 241 atgctcgctctcactggagtgttgagtccttgctttcactgttttctataatgatcctgt 300
           |||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 441 atgctctctctcactggagtgttgagtctttgctttcactgttttctataatgatcctgt 500

                                                                       
Query: 301 atatcaggggaaaatagcttctataaatggtgatcaaacctctaactttattaatccatt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atatcaggggaaaatagcttctataaatggtgatcaaacctctaactttattaatccatt 560

                                                                       
Query: 361 cctttggaattggggtattaagaaatgttcttagagatacaggaactactcat------g 414
           |||||||||||||||||||||||||||||||||||||||||||||||||||||      |
Sbjct: 561 cctttggaattggggtattaagaaatgttcttagagatacaggaactactcatactcatg 620

                                                                       
Query: 415 tgcaaataaatcattcattataacaaaaacagaaatatacatatattctgtttggcttat 474
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgcaaatatatcattcattataacaaaaacagaaatatacatatattctgtttggcttat 680

                                                  
Query: 475 agcttg---------------gatctaattttgttacaa 498
           ||||||               ||||||||||||||||||
Sbjct: 681 agcttgttggcttatagcttggatctaattttgttacaa 719


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 498
Length of database: 904
Length adjustment: 10
Effective length of query: 488
Effective length of database: 894
Effective search space:   436272
Effective search space used:   436272
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)