MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-539N04
Chromosome	12 (Build37)
Map Location	55,894,216 - 55,894,777
singlet/doublet	singlet
Overlap gene	Snx6
Upstream gene	Npas3, Egln3, EG665239, EG665251, LOC665256, LOC621363, 1110002B05Rik, Eapp, LOC673582, LOC100039735, LOC100039764
Downstream gene	Cfl2, Baz1a, LOC100039804, 2700097O09Rik, LOC665144, EG665137, Srp54, 1700047I17Rik, LOC100039815, LOC665155, LOC100039830, Ppp2r3c, 1110008L16Rik, LOC673593, LOC665366, Psma6, LOC100039871, Nfkbia, Aldoa-ps1, Insm2, Garnl1
Link	Open Mouse BAC browser

Click to get alignment info.

name	Npas3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:27386 MGI:1351610
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Egln3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:112407 MGI:1932288
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG665239 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:665239 MGI:3644880
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 ESTs

name	EG665251 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:665251 MGI:3645464
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 8 mRNAs, 563 ESTs

name	LOC665256 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:665256
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins pseudo : _no_value

name	LOC621363 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:621363
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 279 ESTs, 2 Proteins pseudo : _no_value

name	1110002B05Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:104725 MGI:1913399
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Eapp (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:66266 MGI:1913516
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC673582 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:673582
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 mRNAs, 576 ESTs, 7 Proteins

name	LOC100039735 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039735
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins pseudo : _no_value

name	LOC100039764 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039764
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins pseudo : _no_value

name	Snx6 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:72183 MGI:1919433
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Cfl2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12632 MGI:101763
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Baz1a (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:217578 MGI:1309478
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 mRNAs, 283 ESTs, 2 Proteins

name	LOC100039804 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039804
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins pseudo : _no_value

name	2700097O09Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:72658 MGI:1919908
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC665144 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:665144
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 3 Proteins pseudo : _no_value

name	EG665137 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:665137 MGI:3646392
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 mRNAs, 53 ESTs, 4 Proteins

name	Srp54 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:24067 MGI:1346087
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	1700047I17Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:73385 MGI:1920635
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100039815 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039815
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 ESTs, 5 Proteins

name	LOC665155 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:665155
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 10 mRNAs, 509 ESTs, 8 Proteins

name	LOC100039830 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039830
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 ESTs, 5 Proteins

name	Ppp2r3c (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:59032 MGI:1930009
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	1110008L16Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:66132 MGI:1913382
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 8 mRNAs, 78 ESTs, 3 Proteins

name	LOC673593 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:673593
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs

name	LOC665366 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:665366
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 299 ESTs, 6 Proteins pseudo : _no_value

name	Psma6 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:26443 MGI:1347006
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100039871 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039871
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins pseudo : _no_value

name	Nfkbia (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:18035 MGI:104741
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Aldoa-ps1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:79459 MGI:1931052
definition	gene_synonym : 4933425L11Rik; Aldo1-ps1 note : aldolase 1, A isoform, pseudogene 1 pseudo : _no_value

name	Insm2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:56856 MGI:1930787
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Garnl1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:56784 MGI:1931050
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	Npas3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:7305318 GeneID:27386 MGI:1351610
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : neuronal PAS domain protein 3 transcript_id : NM_013780.1

name	Egln3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:15375329 GeneID:112407 MGI:1932288
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : EGL nine homolog 3 (C. elegans) transcript_id : NM_028133.1

name	EG665239 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94392848 GeneID:665239 MGI:3644880
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 ESTs product : predicted gene, EG665239 transcript_id : XM_975549.1

name	EG665251 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94392850 GeneID:665251 MGI:3645464
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 8 mRNAs, 563 ESTs product : predicted gene, EG665251 transcript_id : XM_975633.1

name	1110002B05Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:114145570 GeneID:104725 MGI:1913399
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 1110002B05 gene transcript_id : NM_134054.2

name	Eapp (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142363583 GeneID:66266 MGI:1913516
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : E2F-associated phosphoprotein transcript_id : NM_025456.3

name	LOC673582 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149263241 GeneID:673582
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 mRNAs, 576 ESTs, 7 Proteins product : similar to ribosomal protein L31 transcript_id : XM_001473217.1

name	Snx6 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142387834 GeneID:72183 MGI:1919433
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : sorting nexin 6 transcript_id : NM_026998.3

name	Cfl2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:126513132 GeneID:12632 MGI:101763
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cofilin 2, muscle transcript_id : NM_007688.2

name	Baz1a (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149263243 GeneID:217578 MGI:1309478
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 mRNAs, 283 ESTs, 2 Proteins product : bromodomain adjacent to zinc finger domain 1A transcript_id : XM_885873.3

name	2700097O09Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:21312237 GeneID:72658 MGI:1919908
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 2700097O09 gene transcript_id : NM_028314.1

name	EG665137 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94392821 GeneID:665137 MGI:3646392
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 mRNAs, 53 ESTs, 4 Proteins product : predicted gene, EG665137, transcript variant 2 transcript_id : XM_976235.1

name	Srp54 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:89337278 GeneID:24067 MGI:1346087
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : signal recognition particle 54 transcript_id : NM_011899.3

name	1700047I17Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:37537561 GeneID:73385 MGI:1920635
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 1700047I17 gene transcript_id : NM_028527.1

name	LOC100039815 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149263247 GeneID:100039815
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 ESTs, 5 Proteins product : similar to putative phosphatase subunit transcript_id : XM_001473587.1

name	LOC665155 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149263246 GeneID:665155
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 276 ESTs, 1 Protein product : similar to signal recognition particle 54, transcript variant 3 transcript_id : XM_976391.2

name	LOC100039830 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149263249 GeneID:100039830
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 ESTs, 5 Proteins product : similar to putative phosphatase subunit transcript_id : XM_001473627.1

name	Ppp2r3c (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:109809755 GeneID:59032 MGI:1930009
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : protein phosphatase 2, regulatory subunit B'', gamma transcript_id : NM_021529.3

name	1110008L16Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94392845 GeneID:66132 MGI:1913382
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 8 mRNAs, 78 ESTs, 3 Proteins product : RIKEN cDNA 1110008L16 gene transcript_id : XM_885948.2

name	LOC673593 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149263251 GeneID:673593
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs product : hypothetical LOC673593 transcript_id : XM_001473674.1

name	Psma6 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142364079 GeneID:26443 MGI:1347006
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : proteasome (prosome, macropain) subunit, alpha type 6 transcript_id : NM_011968.2

name	Nfkbia (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6754839 GeneID:18035 MGI:104741
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : nuclear factor of kappa light chain gene enhancer in B-cells inhibitor, alpha transcript_id : NM_010907.1

name	Insm2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:9938005 GeneID:56856 MGI:1930787
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : insulinoma-associated 2 transcript_id : NM_020287.1

name	Garnl1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:51230691 GeneID:56784 MGI:1931050
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : GTPase activating RANGAP domain-like 1 transcript_id : NM_001003719.1

name	Garnl1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:51230428 GeneID:56784 MGI:1931050
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : GTPase activating RANGAP domain-like 1 transcript_id : NM_019994.4

name	Npas3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:7305319 CCDS:CCDS25907.1 GeneID:27386 MGI:1351610
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] [Evidence IDA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0004871 - signal transducer activity [Evidence IEA]; GO:0030528 - transcription regulator activity [Evidence IEA]; GO:0000155 - two-component sensor activity [Evidence IEA] GO_process : GO:0007610 - behavior [Evidence IMP]; GO:0007626 - locomotory behavior [Evidence IMP]; GO:0042711 - maternal behavior [Evidence IMP]; GO:0045449 - regulation of transcription [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0007165 - signal transduction [Evidence IEA]; GO:0035176 - social behavior [Evidence IMP]; GO:0006350 - transcription [Evidence IEA]; GO:0000160 - two-component signal transduction system (phosphorelay) [Evidence IEA] codon_start : 1 exception : mismatches in translation product : neuronal PAS domain protein 3 protein_id : NP_038808.1

name	Egln3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:15375330 CCDS:CCDS25908.1 GeneID:112407 MGI:1932288
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0005506 - iron ion binding [Evidence IEA]; GO:0031418 - L-ascorbic acid binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]; GO:0016706 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors [Evidence IEA]; GO:0016702 - oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen [Evidence IEA] GO_process : GO:0006915 - apoptosis [Evidence IEA]; GO:0019538 - protein metabolism [Evidence IEA] codon_start : 1 exception : mismatches in translation function : putative role in growth regulation and apoptosis product : EGL nine homolog 3 protein_id : NP_082409.1

name	EG665239 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94392849 GeneID:665239 MGI:3644880
definition	codon_start : 1 product : hypothetical protein protein_id : XP_980643.1

name	EG665251 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94392851 GeneID:665251 MGI:3645464
definition	codon_start : 1 product : similar to ribosomal protein L21 protein_id : XP_980727.1

name	1110002B05Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:114145571 GeneID:104725 MGI:1913399
definition	GO_component : GO:0016020 - membrane [Evidence IEA] codon_start : 1 product : hypothetical protein LOC104725 protein_id : NP_598815.2

name	Eapp (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13384860 CCDS:CCDS25910.1 GeneID:66266 MGI:1913516
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] codon_start : 1 product : E2F-associated phosphoprotein protein_id : NP_079732.1

name	LOC673582 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149263242 GeneID:673582
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001473267.1

name	Snx6 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27754031 GeneID:72183 MGI:1919433
definition	GO_function : GO:0035091 - phosphoinositide binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA] GO_process : GO:0007242 - intracellular signaling cascade [Evidence IEA] codon_start : 1 product : sorting nexin 6 protein_id : NP_081274.2

name	Cfl2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6671746 GeneID:12632 MGI:101763
definition	GO_component : GO:0005856 - cytoskeleton [Evidence IEA]; GO:0005622 - intracellular [Evidence IEA]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003779 - actin binding [Evidence IEA] codon_start : 1 product : cofilin 2, muscle protein_id : NP_031714.1

name	Baz1a (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149263244 GeneID:217578 MGI:1309478
definition	codon_start : 1 product : bromodomain adjacent to zinc finger domain 1A protein_id : XP_890966.3

name	2700097O09Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21312238 CCDS:CCDS25912.1 GeneID:72658 MGI:1919908
definition	GO_function : GO:0008168 - methyltransferase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] codon_start : 1 exception : mismatches in translation product : hypothetical protein LOC72658 protein_id : NP_082590.1

name	EG665137 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94392822 GeneID:665137 MGI:3646392
definition	codon_start : 1 product : similar to RNA polymerase II subunit hRPB17 isoform 2 protein_id : XP_981329.1

name	Srp54 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31981338 GeneID:24067 MGI:1346087
definition	GO_component : GO:0016020 - membrane [Evidence IEA]; GO:0005634 - nucleus [Evidence IEA]; GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO:0005786 - signal recognition particle (sensu Eukaryota) [Evidence IEA] GO_function : GO:0005525 - GTP binding [Evidence IEA]; GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA] GO_process : GO:0006605 - protein targeting [Evidence IEA]; GO:0006614 - SRP-dependent cotranslational protein targeting to membrane [Evidence IEA] codon_start : 1 note : signal recognition particle 54 kDa; 54K subunit of signal recognition particle product : signal recognition particle 54 protein_id : NP_036029.2

name	1700047I17Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:37537562 CCDS:CCDS25913.1 GeneID:73385 MGI:1920635
definition	GO_function : GO:0003998 - acylphosphatase activity [Evidence IEA] codon_start : 1 product : hypothetical protein LOC73385 protein_id : NP_082803.1

name	LOC100039815 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149263248 GeneID:100039815
definition	codon_start : 1 product : similar to putative phosphatase subunit protein_id : XP_001473637.1

name	LOC665155 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:94392826 GeneID:665155
definition	codon_start : 1 product : similar to signal recognition particle 54 isoform 3 protein_id : XP_981485.1

name	LOC100039830 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149263250 GeneID:100039830
definition	codon_start : 1 product : similar to putative phosphatase subunit protein_id : XP_001473677.1

name	Ppp2r3c (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31560309 GeneID:59032 MGI:1930009
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] GO_function : GO:0005509 - calcium ion binding [Evidence IEA]; GO:0003674 - molecular_function [Evidence ND] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 product : phosphatase subunit gene g4-1 protein_id : NP_067504.2

name	LOC673593 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149263252 GeneID:673593
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001473724.1

name	1110008L16Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94392846 GeneID:66132 MGI:1913382
definition	codon_start : 1 product : hypothetical protein LOC66132 protein_id : XP_891041.2

name	Psma6 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6755198 CCDS:CCDS25917.1 GeneID:26443 MGI:1347006
definition	GO_component : GO:0005829 - cytosol [Evidence IEA]; GO:0005839 - proteasome core complex (sensu Eukaryota) [Evidence IEA]; GO:0043234 - protein complex [Evidence IEA] GO_function : GO:0004175 - endopeptidase activity [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0008233 - peptidase activity [Evidence IEA]; GO:0004298 - threonine endopeptidase activity [Evidence IEA] GO_process : GO:0006511 - ubiquitin-dependent protein catabolism [Evidence IEA] codon_start : 1 product : proteasome (prosome, macropain) subunit, alpha type 6 protein_id : NP_036098.1

name	Nfkbia (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6754840 CCDS:CCDS25918.1 GeneID:18035 MGI:104741
definition	GO_component : GO:0005737 - cytoplasm [Evidence IDA]; GO:0005829 - cytosol [Evidence IDA]; GO:0005634 - nucleus [Evidence IDA] GO_function : GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0045638 - negative regulation of myeloid cell differentiation [Evidence IMP]; GO:0045746 - negative regulation of Notch signaling pathway [Evidence IMP]; GO:0000060 - protein import into nucleus, translocation [Evidence IDA]; GO:0042127 - regulation of cell proliferation [Evidence IDA] codon_start : 1 exception : mismatches in translation note : I(Kappa)B(alpha); nuclear factor of kappa light polyp gene enhancer in B-cell 1 product : nuclear factor of kappa light chain gene enhancer in B-cells inhibitor, alpha protein_id : NP_035037.1

name	Insm2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:9938006 CCDS:CCDS25919.1 GeneID:56856 MGI:1930787
definition	GO_component : GO:0005634 - nucleus [Evidence ISS] GO_function : GO:0046872 - metal ion binding [Evidence IEA]; GO:0003714 - transcription corepressor activity [Evidence ISS]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0016481 - negative regulation of transcription [Evidence ISS] codon_start : 1 exception : mismatches in translation note : mlt 1 product : insulinoma-associated 2 protein_id : NP_064683.1

name	Garnl1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:51230692 GeneID:56784 MGI:1931050
definition	GO_component : GO:0005737 - cytoplasm [Evidence IDA]; GO:0005634 - nucleus [Evidence IDA] GO_function : GO:0005096 - GTPase activator activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0005098 - Ran GTPase activator activity [Evidence ISS]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0045449 - regulation of transcription [Evidence IDA] codon_start : 1 note : isoform 3 is encoded by transcript variant 3; tulip 1 protein; GAP-related interacting partner to E12; tuberin-like protein 1 product : GTPase activating RANGAP domain-like 1 isoform 3 protein_id : NP_001003719.1

name	Garnl1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:51230429 GeneID:56784 MGI:1931050
definition	GO_component : GO:0005737 - cytoplasm [Evidence IDA]; GO:0005634 - nucleus [Evidence IDA] GO_function : GO:0005096 - GTPase activator activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0005098 - Ran GTPase activator activity [Evidence ISS]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0045449 - regulation of transcription [Evidence IDA] codon_start : 1 note : isoform 2 is encoded by transcript variant 2; tulip 1 protein; GAP-related interacting partner to E12; tuberin-like protein 1 product : GTPase activating RANGAP domain-like 1 isoform 2 protein_id : NP_064378.4

name	LOC665256 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:665256
definition	number : 1 pseudo : _no_value

name	LOC100039735 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039735
definition	number : 1 pseudo : _no_value

name	LOC100039735 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039735
definition	number : 2 pseudo : _no_value

name	LOC100039764 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039764
definition	number : 2 pseudo : _no_value

name	LOC100039764 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039764
definition	number : 1 pseudo : _no_value

name	LOC100039804 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039804
definition	number : 4 pseudo : _no_value

name	LOC100039804 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039804
definition	number : 3 pseudo : _no_value

name	LOC100039804 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039804
definition	number : 2 pseudo : _no_value

name	LOC100039804 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039804
definition	number : 1 pseudo : _no_value

name	LOC100039871 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039871
definition	number : 1 pseudo : _no_value

name	LOC621363 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149263240 GeneID:621363
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 279 ESTs, 2 Proteins product : similar to 60S ribosomal protein pseudo : _no_value transcript_id : XR_031058.1

name	LOC665144 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149263245 GeneID:665144
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 3 Proteins product : similar to Translocase of outer mitochondrial membrane 20 homolog (yeast) pseudo : _no_value transcript_id : XR_031196.1

name	LOC665366 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149263253 GeneID:665366
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 299 ESTs, 6 Proteins product : similar to Ribosomal protein L18A pseudo : _no_value transcript_id : XR_031339.1

clone name	MSMg01-278K11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-329O21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-390H11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-303N20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-454N07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-046O21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-179J15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-467J14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-113G04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-422B18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-358L07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-071C18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-156C03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-490K05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-491I10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-183C06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-334A02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-381H07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-193P10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-505P16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-436N13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-444N19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-099C14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-138A19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-189M11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-337P12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-236C15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-333O22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-484B15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-409C02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-373E06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-169O01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-211F10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-096K16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-512L01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-180J12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-480C06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-451N13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-434A04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-288A07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-141O18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-167E17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-294C07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-268D09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-340E07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-164O22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-475M07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-482C19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-173F18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-092E22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-170P20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-275M12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-291H19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-539N04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-321B23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-386I16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-063G03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-133E17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-194H13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-120M04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-194H12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-177L09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-177N03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-130G22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-327N20
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-543E21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-358C16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-465H24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-195I19
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-517O10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-354F16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-113A11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-050J24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-472D23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-441O02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-434H16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-403B15
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-104M24
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-420K07
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-142D13
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-161O09
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-490N08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-514M24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-138H20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-298O06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-337B08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-483P24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-275H05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-318I13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-487A03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-309C05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-378A24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-485E24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-099H07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-482G07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-060M08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-407A21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-270E03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-049G10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-141O02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-382I15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-065O15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-260L11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-170J12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-013L16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-059O15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-197J17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-260K07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-150O18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-007M13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-291M16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-111M17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-234P23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-139C18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-334M21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-055C18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-152B19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-252K11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-291L16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-108F10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-133H03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-206E22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-298M06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-013F11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-107H14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-061G06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-044O21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-328I01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-198O23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-118B15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-178A17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-340B18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-176C16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-237E02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-074C22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-010K03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-143I06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-066E14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-140C15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-246N14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-084K17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-282F08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-064L10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-044B05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-286L18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-032M16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-338O16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-130I20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-240A12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-193G08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-208K12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-057F17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-333P23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-077A16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-053O13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-189B11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-229N12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-089C18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-291C05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-184P05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-332F04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-256C07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-203M24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-270N20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-145H18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-307F10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-255A19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-332G14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-342K24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-093L08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-239G24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-129F24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-018P06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-229N19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-246P13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-259K10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-043J13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-125L05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-108L06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-295M20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-173F15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-244P05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-021I16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-202J01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-289B23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-338H20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-033E17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-211H23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-143G01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-292N18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-267O02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-196H11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-127I15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-337A15
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-539N04.T7 (MSMg01no539_n04.b1)	MSMg01-539N04.TJ (MSMg01no539_n04.g1)
ACC	AG606222	AG606223
length	729	753
length of high quality (start - end)	---	576 (83 - 658)
definition	CHROMAT_FILE: MSMg01no539_n04.b1 PHD_FILE: MSMg01no539_n04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:18:54 2005	CHROMAT_FILE: MSMg01no539_n04.g1 PHD_FILE: MSMg01no539_n04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:18:55 2005
singlet/doublet	---	singlet
BLAST hit	no hit data	unique
sequence	ATCAAATTTGCGGCGCTAAACACTCCTTTTCAAGAGGACCGCGGAATCTT TTGTACTATACCCGTTACTTCTTATAAGCAAGAACGGAGCTTATGGGGGG GCGGGGGGTGGCTGGGGAGGAGGGGGCGGCGGAGGGGAAGGGAGGGTCCT CTNAATGGGCACATGTACAATTTTTATTTTTATGAACTGTATATNCCTGT GAATGAAGGGGGCCCCTGAATGCCAGAACTGAGGAATCCAAGGGATTNAT TCGGCACCTGAATACAGCACTTGAAACCTCTAACTGGGGCCAAGTTTAAA CCCGCCCCCAAAAAAAAAAAGGGCCAAACAAACACCTTCCCCCCCTGTGG AATAAAAACTTTCCCCCCCCTCTCTATCTTAAAAAAAAAATTTTTTATTC CCCCCCTTTTTTTTGGGGGGGAGGGGCCCCCCTTTTTTCCAAGGGTAAAA AATATTTTTTNTTTTTTTTTCCCCCCCAAAAAAAAAACCCCTTTTTTNCC CCCCCACAACNNTTTAAAAAACAACAATTTTTTTCTTTTATTTTTTTNCA CCCCCCCCCCCCCCCTCATTTATTTTTNNCTNNCCGAAAAAAATAANNNN AAAAAAAAAAAAGGAGACTACACCCCCCCCTTCCCAAAAAAAAAAAAAGA AATATTTTTCCCGAGGAAAAAAAAAAAAAAAGACCCCCCACCTCCTAATT TAATGTGCTGGGGGGGGGTGGGGGGTGGT	NNNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGGCCAGTCATAGCTAC AAAGCAAGACCCTGTCTCAAAACATCAAACAAAACAAACCCCAAAATACA ATTAGTAAATTCTAATTCTGTCTTATCCAAATCTCTCTCTCTCTCTCTCT CTCTCTCTCTCTCTTTGTAATTAATACACATAAGCATTGTTTTATAGTTA ACTAGAGGTTAAATTTTAGAAACCAGAAATCAAATGAAGCTGCTATGTAA ACTGAGGGAGTTCATTTATCATTTACAAAAGCATCTGGAAGCTGGGAATG GTGGTGCACGCCTTTAATCCCAGCATTTAGGAGGCAGAGGCAGGTGTATT TCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAG GGCTACACAGAGAAACCCTGTCTTGGAAAAAAACAAAAAAGCATCTAGCT GCTACTCTCAGGTCCCCGGTGAGGAGTCTCTATCCACACCACAGGACTTT TAAAGACACCTTAGAGAAACTTACATCCCATGCTCTTGGGTGTGCCTGTC TTTCTTTCCAAGAGAGTGGCTCTTTCCTAACCCTCATGCTTAAGCCTGAA TTAAATAGCTTTATTAAACCCCAACCTTGGCCTGCAAGATGGCTAGGTAA GTGAAGTGCTTGCTAACAATCGGAGTTCATTCCCAGAACCCATGTATCAG TAG
quality values	Open. Hide. 6 6 6 8 6 12 17 14 19 16 15 10 10 12 22 22 19 9 9 11 19 19 22 9 10 10 11 7 7 6 6 6 6 9 8 11 8 8 8 8 19 27 27 19 9 9 9 22 22 27 23 9 9 9 9 9 9 10 15 22 37 27 37 28 30 28 33 29 29 27 24 26 25 25 17 9 8 8 8 8 8 9 10 8 9 9 6 6 6 6 6 6 8 8 8 9 9 12 16 12 9 9 9 12 12 9 9 6 6 6 6 7 7 9 17 16 12 9 9 9 9 8 12 7 7 6 6 6 6 7 6 6 6 9 10 9 9 9 9 6 13 6 6 6 6 9 9 9 10 10 6 3 0 3 7 14 15 15 17 8 8 8 12 15 12 10 10 12 12 14 19 24 26 26 21 27 19 19 23 14 14 8 8 8 10 8 8 9 8 7 7 8 8 3 0 3 14 11 10 10 10 9 9 9 8 8 9 10 10 10 10 10 8 8 8 6 8 8 9 6 8 8 8 8 8 8 8 8 7 8 8 6 7 6 6 15 13 9 9 9 11 8 19 8 6 6 3 0 3 11 11 11 11 11 11 8 8 8 12 12 12 8 8 8 8 8 8 8 10 12 9 9 9 6 6 6 8 8 8 10 8 7 6 6 6 6 12 18 12 10 10 8 8 10 8 8 8 8 8 8 12 11 9 9 9 10 10 13 14 14 10 15 8 8 7 11 10 17 10 10 10 9 13 8 8 8 10 10 9 8 8 8 8 8 8 9 10 9 9 9 9 12 15 9 8 8 8 6 7 8 8 6 6 6 8 8 11 10 10 11 11 12 9 10 9 10 8 8 9 10 10 8 8 8 8 8 8 8 8 8 10 9 9 11 13 16 16 12 10 9 13 13 23 15 18 10 10 10 10 12 14 17 25 15 10 9 9 10 17 17 21 14 13 10 10 9 9 9 10 10 12 11 8 8 8 8 8 12 15 17 18 9 9 9 10 14 17 15 13 13 12 12 10 10 10 13 13 16 16 12 10 8 6 6 6 9 15 13 11 3 0 3 17 13 19 14 13 11 11 16 16 18 22 19 25 19 11 11 10 10 11 18 24 17 21 17 15 15 8 10 10 8 8 10 9 13 3 0 3 13 12 14 15 10 8 6 6 8 8 3 0 0 3 9 10 10 12 14 24 13 8 8 8 8 8 8 10 21 32 35 24 19 18 9 9 9 9 8 9 9 8 8 8 9 9 10 3 0 3 10 10 17 14 9 8 9 10 11 14 23 19 19 17 14 12 8 8 8 8 7 8 7 7 7 6 8 3 0 0 3 3 0 0 3 9 12 17 21 17 18 9 9 9 9 9 3 0 0 0 0 3 16 15 25 27 31 37 41 29 23 23 8 8 8 8 8 8 11 8 8 6 7 6 8 10 10 9 9 10 11 10 11 19 21 19 9 9 12 17 26 28 19 17 14 14 19 19 12 7 7 8 8 8 8 8 8 17 10 9 10 23 8 8 6 6 6 6 15 18 16 16 17 25 25 25 20 10 10 11 15 12 8 8 8 10 12 12 8 8 10 10 10 8 8 8 8 8 8 10 10 8 10 19 8 8 8 8 7 7 8 13 21 25 25 27 15 13 7 7 7 13 17 13 12 8 8 8 8 6	Open. Hide. 0 0 0 0 3 8 8 8 10 10 9 9 9 8 6 9 9 9 16 15 24 24 28 28 37 37 37 37 39 50 50 50 47 27 23 16 9 9 9 11 9 11 10 10 10 10 10 23 21 27 27 37 44 37 37 47 47 37 37 37 41 41 43 25 23 8 7 7 10 13 12 13 10 15 23 25 30 30 29 29 33 33 33 31 41 32 25 25 31 35 35 35 33 43 43 48 30 27 23 20 20 32 32 43 48 48 46 44 43 43 39 43 41 48 43 41 37 37 30 43 43 44 36 37 37 35 31 43 42 48 48 57 57 47 47 44 44 42 41 37 37 39 37 57 57 57 57 47 47 47 57 57 68 68 68 57 50 50 50 50 46 41 47 50 50 50 47 46 52 57 52 54 54 57 57 57 52 52 52 57 57 57 57 57 59 54 54 54 57 57 57 57 59 59 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 59 52 57 52 59 44 59 59 57 68 68 57 57 57 59 57 57 57 57 57 57 59 59 68 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 62 62 62 62 62 62 62 68 68 68 68 68 68 68 62 62 62 62 62 43 43 43 43 35 44 44 62 62 62 62 62 62 62 68 68 62 62 62 62 62 62 62 68 62 62 68 68 62 62 62 62 62 62 62 62 68 68 62 62 62 45 62 52 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 52 45 45 52 62 62 62 62 62 68 68 68 68 62 62 62 62 62 62 62 68 68 68 62 62 62 52 52 52 62 62 52 52 62 62 62 62 62 52 52 43 47 43 62 62 62 62 62 62 52 52 52 62 62 62 62 62 68 68 62 62 68 68 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 43 43 45 62 62 62 45 45 52 45 45 45 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 47 62 52 43 43 43 44 57 39 39 39 43 31 31 39 43 43 43 43 39 39 35 35 43 36 57 43 45 39 44 43 39 39 43 43 43 33 33 41 44 43 52 52 59 59 68 57 57 52 52 52 57 57 59 57 52 52 43 43 43 43 43 43 43 52 52 57 50 57 52 52 43 43 32 43 23 43 43 43 43 46 46 46 46 43 57 57 57 57 43 43 43 33 33 35 42 42 57 44 59 48 48 44 46 42 42 35 35 35 42 43 47 47 47 57 57 57 57 57 57 48 43 37 39 43 43 34 41 27 20 21 32 27 44 39 43 39 40 32 30 30 32 32 31 31 29 28 25 24 31 24 24 25 37 37 59 39 33 33 33 25 25 24 26 19 19 24 32 35 35 28 31 13 13 10 15 14 23 30 28 28 22 16 16 11 11 11 25 28 59 30 28 28 21 25 19 18 18 27 28 30 30 30 24 25 22 34 31 32 32 18 20 21 23 21 19 25 22 30 32 30 18 14 14 12 10 18 18 20 18 18 19 19 20 18 16 27 19 20 20 15 14 18 17 15 14 20 20 18 16 14 12 10 12 13 14 13 21 21 28 29 27 28 27 22 16 16 19 32 32 37 28 19 11 8 8 8 8 18 15 17 12 8 8 8 10 10 10 10 25 18 15 10 10 10 15 15 25 25 37 30 23 20 15 12 12 10 10 10 11 13 13 11 11 11 11 12 13 11

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no539_n04.g1 MSMg01no539_n04.g1 CHROMAT_FILE:
MSMg01no539_n04.g1 PHD_FILE: MSMg01no539_n04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:18:55 2005
         (576 letters)



>mm_chr12_55894002_55894977
          Length = 976

 Score = 1025 bits (530), Expect = 0.0
 Identities = 558/576 (96%), Gaps = 14/576 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctggccagtcatagctacaaagcaagaccctgtctcaaaacatcaaacaaaacaaacccc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 ctggccagtcatagctacaaagcaagaccctgtctcaaaacatcaaacaaaacaaacccc 274

                                                                       
Query: 61  aaaatacaattagtaaattctaattctgtcttatccaaatctctctctctctctctctct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  
Sbjct: 275 aaaatacaattagtaaattctaattctgtcttatccaaatctctctctctctctctct-- 332

                                                                       
Query: 121 ctctctctctctttgtaattaatacacataagcattgttttatagttaactagaggttaa 180
                       ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 ------------ttgtaattaatacacataagcattgttttatagttaactagaggttaa 380

                                                                       
Query: 181 attttagaaaccagaaatcaaatgaagctgctatgtaaactgagggagttcatttatcat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 attttagaaaccagaaatcaaatgaagctgctatgtaaactgagggagttcatttatcat 440

                                                                       
Query: 241 ttacaaaagcatctggaagctgggaatggtggtgcacgcctttaatcccagcatttagga 300
           ||||||||| ||||||||||||||||||||||  ||||||||||||||||||||||||||
Sbjct: 441 ttacaaaagtatctggaagctgggaatggtggcacacgcctttaatcccagcatttagga 500

                                                                       
Query: 301 ggcagaggcaggtgtatttctgagttcgaggccagcctggtctacagagtgagttccagg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggcagaggcaggtgtatttctgagttcgaggccagcctggtctacagagtgagttccagg 560

                                                                       
Query: 361 acagccagggctacacagagaaaccctgtcttggaaaaaaacaaaaaagcatctagctgc 420
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 561 acagccagggctacacagagaaaccctgtcttggaaaaaaacaaaaaagcatctggctgc 620

                                                                       
Query: 421 tactctcaggtccccggtgaggagtctctatccacaccacaggacttttaaagacacctt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tactctcaggtccccggtgaggagtctctatccacaccacaggacttttaaagacacctt 680

                                                                       
Query: 481 agagaaacttacatcccatgctcttgggtgtgcctgtctttctttccaagagagtggctc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 agagaaacttacatcccatgctcttgggtgtgcctgtctttctttccaagagagtggctc 740

                                               
Query: 541 tttcctaaccctcatgcttaagcctgaattaaatag 576
           ||||||||||||||||||||||||||||||||||||
Sbjct: 741 tttcctaaccctcatgcttaagcctgaattaaatag 776


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 576
Length of database: 976
Length adjustment: 10
Effective length of query: 566
Effective length of database: 966
Effective search space:   546756
Effective search space used:   546756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information