Query= MSMg01no539_o05.b1 MSMg01no539_o05.b1 CHROMAT_FILE:
MSMg01no539_o05.b1 PHD_FILE: MSMg01no539_o05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:19:00 2005
(614 letters)
>mm_chr12_62875858_62876870
Length = 1013
Score = 1164 bits (602), Expect = 0.0
Identities = 611/614 (99%), Gaps = 1/614 (0%)
Strand = Plus / Plus
Query: 1 tatgtcttgtataaaaataaaacatgagatgttataattaatgaaagtcgatgaaagatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tatgtcttgtataaaaataaaacatgagatgttataattaatgaaagtcgatgaaagatt 260
Query: 61 cttttctaatatctctaacaagacaagaaagcttggttttatcacaattgctcagactag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttttctaatatctctaacaagacaagaaagcttggttttatcacaattgctcagactag 320
Query: 121 tactggaatatagatgttaatagaaaaacaaaaacaaaaacaaaaaacaaaaaacaaaca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tactggaatatagatgttaatagaaaaacaaaaacaaaaacaaaaaacaaaaaacaaaca 380
Query: 181 aacaaacaaacaaacccaaaaaactaaagagcctagagaaaaagacagaaattgaacaat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aacaaacaaacaaacccaaaaaactaaagagcctagagaaaaagacagaaattgaacaat 440
Query: 241 ccctggttacattacatgatatatacagacaggctccattaaacaactataagtaatttt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccctggttacattacatgatatatacagacaggctccattaaacaactataagtaatttt 500
Query: 301 tgatgaagaagctaagagggcaaaatagagaagggacagtaagtttcaacaaatgatgat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgatgaagaagctaagagggcaaaatagagaagggacagtaagtttcaacaaatgatgat 560
Query: 361 aaacacattggataattactggaagaagaaatttattccatatttagtctatatgaaagg 420
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 561 aaacacattggataattactggaagaagaaatttattctatatttagtctatatgaaagg 620
Query: 421 aaaagttagtcataatagattaagtatcttagtaagaactgaactcatgaaaaaagtaga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaaagttagtcataatagattaagtatcttagtaagaactgaactcatgaaaaaagtaga 680
Query: 481 aaaatgtatgaaaaatgtttttgaaagatatttttgaaaatatctctaaaatctagcaaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 681 aaaatgtatgaaaaatgtttttgaaagatatttttgaaaatatctctaaaatcaagcaaa 740
Query: 541 caatactaacagaaacaaatatagttgtggaaaagaaaacagtatctccaaataaggaaa 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 caatactaacagaaacaaatatagttgtggaaaagaaaacagtatctccaaataaggaaa 800
Query: 601 aaaaattaatgaat 614
|||| |||||||||
Sbjct: 801 aaaa-ttaatgaat 813
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 614
Length of database: 1013
Length adjustment: 10
Effective length of query: 604
Effective length of database: 1003
Effective search space: 605812
Effective search space used: 605812
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no539_o05.g1 MSMg01no539_o05.g1 CHROMAT_FILE:
MSMg01no539_o05.g1 PHD_FILE: MSMg01no539_o05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:19:00 2005
(507 letters)
>mm_chr12_63012717_63013620
Length = 904
Score = 837 bits (433), Expect = 0.0
Identities = 485/505 (96%), Gaps = 7/505 (1%)
Strand = Plus / Minus
Query: 1 catacagtatagttttacagtagagaatgagagagagtggtctgggccacatgtcagcag 60
|||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 700 catacagtgcagttttacagtagagaat--gagagagtggtctgggccacatgtcagcag 643
Query: 61 atgcttgaggagtcttggcagaactccaagagttatttgaaatctgtttgatattcagtg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 atgcttgaggagtcttggcagaactccaagagttatttgaaatctgtttgatattcagtg 583
Query: 121 atatctgaacagcctccagcaggaaatggtttgtggatcactacagtggtaaagaggagt 180
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 582 atatctgaacagcctccagcaggcaatggtttgtggatcactacagtggtaaagaggagt 523
Query: 181 tagagctagagactgggaacatataaaaggttgatcgccttacaaactgtcagaaggttt 240
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 tagagctagagactggtaacatataaaaggttgatcgccttacaaactgtcagaaggttt 463
Query: 241 tactactacactatacgtgaaatatatcaagggtctaagcctaaatttgtctagaaagac 300
||||||||||||||| |||||| |||||||||||||||||||| |||||||||||||||
Sbjct: 462 tactactacactataagtgaaagatatcaagggtctaagcctagatttgtctagaaagat 403
Query: 301 gaagggaaaga--aaattgagatttaagtggtcttatatgatcaggatgaagttattgaa 358
||| ||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 gaa---aaaaaggaaattgagatttaagtggtcttatatgatcaggatgaagttattgaa 346
Query: 359 ataacaaacataatcacaaagtaagaagtcatatttactaaatggtgagacatttgtata 418
||||||||||||||| ||||||||| ||||||| |||||||||||||||||||||||||
Sbjct: 345 gtaacaaacataatcataaagtaagatgtcatatgtactaaatggtgagacatttgtata 286
Query: 419 aattaacagaatcctaacaaacagaccaaataatatttttggtgtaagagaaaatacaat 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 aattaacagaatcctaacaaacagaccaaataatatttttggtgtaagagaaaatacaat 226
Query: 479 tctagcatatgaatttgaagatcct 503
|||||||||||||||||||||||||
Sbjct: 225 tctagcatatgaatttgaagatcct 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 507
Length of database: 904
Length adjustment: 10
Effective length of query: 497
Effective length of database: 894
Effective search space: 444318
Effective search space used: 444318
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
