BAC Information

Click to search

BAC

Clone NameMSMg01-540C09
Chromosome12 (Build37)
Map Location 49,179,350 - 49,179,710
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039190, EG664891
Downstream geneGm1818, GA_x5J8B7W54VK-284379-285078, Olfr1399-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-540C09.T7 (MSMg01no540_c09.b1)MSMg01-540C09.TJ (MSMg01no540_c09.g1)
ACCAG606468AG606469
length739740
length of high quality
(start - end)
636 (51 - 686)555 (76 - 630)
definitionCHROMAT_FILE: MSMg01no540_c09.b1 PHD_FILE: MSMg01no540_c09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:19:20 2005CHROMAT_FILE: MSMg01no540_c09.g1 PHD_FILE: MSMg01no540_c09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:19:20 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAATATTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCCAAGTTTTTGGGTAAATATCCACTTATCAGTGAGTGCATA
CCATGTGTGTTCTTTTTAATTGGGTTACCTCCCTCAGGATGATATTTTCT
AGTTTCATCCATTTGCCTAAGAATTTCATTAATTCATTGTTTTTAATATC
TGCATAGGACTCCATTGTGTAACTGTAGCATATTTTCCATTCCTCTGTTA
AAGGATATTTAGATTATTTCCACCTTCTGGATATTATAAGTAAAGCTGCT
ATGAACAGCATGGAGCATGTGTCCTTATTATATGTTAGAGCATCTTTTGG
GTGTATACCCAGGAGTGGTATAGCTGGGTTTTCAAGTAGTACTATGTCAA
ATTTTCTGAGGAACCTCCAAACTGAATTCCTGAGTGGTTTTACAAGCTTG
TAATCCCACCAGCAATGTAGGAGTGTTCTGCTTTCTTCACATTCTTGCCA
GCATCTGCTGTCACCTGAGTTTTGGAGCACCAGCAATGGAGGAGTGTTTT
TAAATGTTGCAAATTCTACTGTGGCTATATTCAATCTTGTTCATGCTTTG
TCTCTAGTAATAGTTAGTTGATAACTCATTAAAAAAACAAACAAACAACT
TTCTTTGGAAAAATACTCTTCCAAGAATCAATTACCTCATGCAGACCATG
AGGTAAATCTTTTTCTTTCCATTCAGACATTAATCTATC
TCCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCTAGAAGTTCTCTTATTGTTGAGA
ATAGTTTTTACCATCCTGGGTTTTTTGTGATTCTAGATACATTTGAGAAT
TGCTTTCTATCTTCATGAAAACCTGAGTTGGAATTTTGAGGGGGATTGCA
CTGAATCAGTAGATTGCTTTTCGTAAGATGGCCATTTTCAATATGTTGAG
CCTGGAGCCTTACTTATAATAACCAGAAGCTGGAAACAACCCAGATTTCT
CTCAACGGAGAAATCCATACAGAAAATGTGGTACATTTAAACAGTGGAGT
ATTACTTAAGTGTAAAAACAATGAATTCATGAAATTCATAGGCAAATGGA
TGGAATGAGAAAATTTCATCTTGAATAAGGTAACCGAGTCACAAGTGAAC
ACGCATGGTATGTATTCACTGATAAGTGGATATTTGGCATAAAGCTAAGA
ATACCCAGGATACACCTCACAGACCATATGAAACTCATGAAGAAGGCAGA
CCAAAGTGTGGATGCTTCAATCCTGCTTAGAAGGGGAAACAAAATAATCA
CAGGAATTCGATTGAGGGACTGACCTANGAGAAAGAGAAGAGAGGGATGG
AAAAGGAACCAGGGTCAGTTGTGGGACAAGACTGGAGAAAAGTACAGAGC
GTTAGGAGTCAGAAAAATGAATAGAGATGTGTAGTAGTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no540_c09.b1 MSMg01no540_c09.b1 CHROMAT_FILE:
MSMg01no540_c09.b1 PHD_FILE: MSMg01no540_c09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:19:20 2005
         (636 letters)



>mm_chr12_49178674_49179710
          Length = 1037

 Score =  654 bits (338), Expect = 0.0
 Identities = 356/362 (98%), Gaps = 2/362 (0%)
 Strand = Plus / Minus

                                                                        
Query: 276  tattatatgttagagcatcttttgggtgtatacccaggagtggtatagctgggttttcaa 335
            ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1037 tattacatgttagagcatcttttgggtgtatacccaggagtggtatagctgggttttcaa 978

                                                                        
Query: 336  gtagtactatgtcaaattttctgaggaacctccaaactgaattcctgagtggttttacaa 395
            |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 977  gtagtactatgtcaaattttctgagg-acctccaaactgaattcctgagtggttttacaa 919

                                                                        
Query: 396  gcttgtaatcccaccagcaatgtaggagtgttctgctttcttcacattcttgccagcatc 455
            |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 918  gcttgtaatcccaccagcaatggaggagtgttctgctttcttcacattcttgccagcatc 859

                                                                        
Query: 456  tgctgtcacctgagttttggagcaccagcaatggaggagtgtttttaaatgttgcaaatt 515
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 858  tgctgtcacctgagttttggagcaccagcaatggaggagtgtttttaaatgttgcaaatt 799

                                                                        
Query: 516  ctactgtggctatattcaatcttgttcatgctttgtctctagtaatagttagttgataac 575
            ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 798  ctactgtggctatattcaatcttgttcatgctttgtctctagtaatagttacttgataac 739

                                                                        
Query: 576  tcattaaaaaaa-caaacaaacaactttctttggaaaaatactcttccaagaatcaatta 634
            |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 738  tcattaaaaaaaacaaacaaacaactttctttggaaaaatactcttccaaggatcaatta 679

              
Query: 635  cc 636
            ||
Sbjct: 678  cc 677


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 636
Length of database: 1037
Length adjustment: 10
Effective length of query: 626
Effective length of database: 1027
Effective search space:   642902
Effective search space used:   642902
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)