Query= MSMg01no540_e16.b1 MSMg01no540_e16.b1 CHROMAT_FILE:
MSMg01no540_e16.b1 PHD_FILE: MSMg01no540_e16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:19:31 2005
(634 letters)
>mm_chr12_60790974_60792007
Length = 1034
Score = 1011 bits (523), Expect = 0.0
Identities = 526/527 (99%)
Strand = Plus / Plus
Query: 1 taacatatctttccataaaatttgtatgcttgctttcaaaactttattgtgaatgattgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taacatatctttccataaaatttgtatgcttgctttcaaaactttattgtgaatgattgc 260
Query: 61 ctgtatttaagcaaagaaaggacatcagtagcttgaagttttctctgtactttgcgatct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgtatttaagcaaagaaaggacatcagtagcttgaagttttctctgtactttgcgatct 320
Query: 121 tgtctataagctatgactatacttagcatgtaaacaaattagtgtattttgcaagaaaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtctataagctatgactatacttagcatgtaaacaaattagtgtattttgcaagaaaga 380
Query: 181 tccaagtttcaaccaatcatacccagcatggcaactcgagtctacttaaggcagtggctc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tccaagtttcaaccaatcatacccagcatggcaactcgagtctacttaaggcagtggctc 440
Query: 241 attattttgtgctgaagtaagcagattcctagcaagagccagtcaggtgttttttgacct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 attattttgtgctgaagtaagcagattcctagcaagagccagtcaggtgttttttgacct 500
Query: 301 ttgcctccatggtcagcctacgcgctcttacatctctcactgcttgggagggtactgtga 360
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttgcctccatggtcagcctatgcgctcttacatctctcactgcttgggagggtactgtga 560
Query: 361 atctctggttctcagtgctgtctgattaatgaactgtttgcgagaaataaatcccgttaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atctctggttctcagtgctgtctgattaatgaactgtttgcgagaaataaatcccgttaa 620
Query: 421 acttaatttgtttcacttgacatagtagctgccttcgaaggcttagatattgtaagacaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 acttaatttgtttcacttgacatagtagctgccttcgaaggcttagatattgtaagacaa 680
Query: 481 ttacttagtccctaataagacattatacatattttttgatactcagg 527
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttacttagtccctaataagacattatacatattttttgatactcagg 727
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 634
Length of database: 1034
Length adjustment: 10
Effective length of query: 624
Effective length of database: 1024
Effective search space: 638976
Effective search space used: 638976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no540_e16.g1 MSMg01no540_e16.g1 CHROMAT_FILE:
MSMg01no540_e16.g1 PHD_FILE: MSMg01no540_e16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:19:31 2005
(558 letters)
>mm_chr12_60923686_60924643
Length = 958
Score = 667 bits (345), Expect = 0.0
Identities = 385/409 (94%), Gaps = 18/409 (4%)
Strand = Plus / Minus
Query: 1 ttgactttaactcaaaatactctgcaaacttgctcttcctctctcaggaagtgccacgct 60
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 392 ttgactttaactcaaaatactctgcaaacttgctcttcctctctcaggaagtaccacgct 333
Query: 61 aagaactgaacagatctattcttcctttcccatcagttcccaaacctgtccatcagaaat 120
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 aagaactgaacagatctactcttcctttcccatcagttcccaaacctgtccatcagaaat 273
Query: 121 tcctaacagttcaacacccatgttgcatcttgcctctttccacatcataaccagggctgt 180
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 272 tcctaacagttcaacacccatgttgcatcttgcctctttccatatcataaccagggctg- 214
Query: 181 gactacagcctgacactgactacagcctgtggagagactctttctcacaggctgctt-cc 239
|||||||||||||||||||||||||||||||||||||| || ||
Sbjct: 213 ----------------tgactacagcctgtggagagactctttctcacaggctgattccc 170
Query: 240 tggtcagttcctgctccttctgttgacctctgttaatccattctatacccagtgcagcag 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 169 tggtcagttcctgctccttctgttgacctctgttaatccattctatacccagtgcagcag 110
Query: 300 agtaaactttcagaaattaaaaatgtaaaccagatcttgttaacatctgcttaatcccct 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 109 agtaaactttcagaaattaaaaatgtaaaccagatcttgttaacatctgcttaatcccct 50
Query: 360 ccagggtttctcattgtaattggaatgaactccaaaggctttatgtgcc 408
||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 49 tcagggtttctcgttgtaattggaatgaactccaaaggctttatgtgcc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 558
Length of database: 958
Length adjustment: 10
Effective length of query: 548
Effective length of database: 948
Effective search space: 519504
Effective search space used: 519504
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
