Query= MSMg01no540_l20.b1 MSMg01no540_l20.b1 CHROMAT_FILE:
MSMg01no540_l20.b1 PHD_FILE: MSMg01no540_l20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:20:07 2005
(616 letters)
>mm_chr12_49066182_49067197
Length = 1016
Score = 1143 bits (591), Expect = 0.0
Identities = 606/611 (99%)
Strand = Plus / Plus
Query: 5 gaattcaaatattttaatctatctctcatgagtacttactaaattttaattctcctcact 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaaatattttaatctatctctcatgagtacttactaaattttaattctcctcact 264
Query: 65 cataatattggttaattctcaattaagtggctgaccccttcctccaatatttatacttat 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cataatattggttaattctcaattaagtggctgaccccttcctccaatatttatacttat 324
Query: 125 ttacttatttatttacttacatccacaatatgctgtccctgttatggtctctcctcagaa 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttacttatttatttacttacatccacaatatgctgtccctgttatggtctctcctcagaa 384
Query: 185 agtctcttccaccaacccccagagactgtgccaccaaccaaagagcatacatgggctggc 244
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 agtctcttccaccaacccacagagactgtgccaccaaccaaagagcatacatgggctggc 444
Query: 245 ctgaggccccaagcattcatgtagcagagggctgctttctctttccttggtgagaaagga 304
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ctgaggccccaagcatgcatgtagcagagggctgctttctctttccttggtgagaaagga 504
Query: 305 cgcacctaatccttcagagacttgatgtgccaggctgagggaaatacccaaggttcctac 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 cgcacctaatccttcagagacttgatgtgccaggctgagggaaatacccaaggttcctac 564
Query: 365 ttgcacctttatttctcatgtactgattataggttgttatttttcagttttaatttgttt 424
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 565 ttgcacctttatttctcatgtactgattataggttgttatttctcagttttaatttgttt 624
Query: 425 ttatatataaaccataagttacagcatatgccatatcaaattgcaatattgtaaacacag 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ttatatataaaccataagttacagcatatgccatatcaaattgcaatattgtaaacacag 684
Query: 485 atcattttaaaattatagtttggttttgtaaatgttaaaaatatagagaaagatattgtt 544
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 atcattttaacattatagtttggttttgtaaatgttaaaaatatagagaaagatattgtt 744
Query: 545 caattacacataatcgatgctgaaggtctaagcatcaacatttttagtcattttgtgaat 604
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 caattacacataatcgatgttgaaggtctaagcatcaacatttttagtcattttgtgaat 804
Query: 605 gctctggaaga 615
|||||||||||
Sbjct: 805 gctctggaaga 815
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 616
Length of database: 1016
Length adjustment: 10
Effective length of query: 606
Effective length of database: 1006
Effective search space: 609636
Effective search space used: 609636
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no540_l20.g1 MSMg01no540_l20.g1 CHROMAT_FILE:
MSMg01no540_l20.g1 PHD_FILE: MSMg01no540_l20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:20:07 2005
(563 letters)
>mm_chr12_49224857_49225819
Length = 963
Score = 1007 bits (521), Expect = 0.0
Identities = 554/565 (98%), Gaps = 4/565 (0%)
Strand = Plus / Minus
Query: 1 actgctgttatcctacaata-tttttttctcttaagaatgaagagcaataactgacttcc 59
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 763 actgctgttatcctacaatattttttttctcttaagaatgaagagcaataactgacttcc 704
Query: 60 ttcaggtctgatgattcctccaactttgaggacagtaatttctgattcatgacataccca 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 703 ttcaggtctgatgattcctccaactttgaggacagtaatttctgattcatgacataccca 644
Query: 120 agtgattaaaaataaaatgcctccatcctccatcttgtaaagtggttagcatagcgccac 179
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 643 agtgattaaaaa-aaaatgcctccatcctccatcttgtaaagtggttagcatagtgccac 585
Query: 180 aacttgcagtttatttgctaggcaaaaatgaagactgtgcttagagtgcta-ctttctct 238
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct: 584 aacttgcagtttatttgctaggcaaaaatgaagactgtgcttggagtgctagctttctct 525
Query: 239 gcaaggaagagatttcagaagcattcctgccatgatgcttcatttcttcctctccatcag 298
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 524 gcaaggaagagatttcagaagcattcctgccatgatgcttcatttcttcctttccatcag 465
Query: 299 gatgagagaagaaacagactacctctcctttaatacattaacttgcatattaaaaaaatg 358
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 464 gatgagagaagaaacagactacctctcctttaatacatcaacttgcatattaaaaaaatt 405
Query: 359 agtgcatttcaaccaaatcattgtcatgtggaagattatttaggacttagatcttatttt 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 agtgcatttcaaccaaatcattgtcatgtggaagattatttaggacttagatcttatttt 345
Query: 419 tggcttatctccaaatgtcagtgggtgagaagaacataatgtcaggtctccaaaaggttt 478
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 344 tggcttatctccaaatgtcagtgggtgagaagaacataatgtcaggtctccaaa-ggttt 286
Query: 479 gtgattactgctattatcctaacaagcaagtttcataagtaagccctatggcaaagaatt 538
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 285 gtgattactgctattatcctaaaaagcaagtttcataagtaagccctatggcaaagaatt 226
Query: 539 ttgaatcggttagagtgactattat 563
|||||| ||||||||||||||||||
Sbjct: 225 ttgaattggttagagtgactattat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 563
Length of database: 963
Length adjustment: 10
Effective length of query: 553
Effective length of database: 953
Effective search space: 527009
Effective search space used: 527009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
