Query= MSMg01no540_l21.b1 MSMg01no540_l21.b1 CHROMAT_FILE:
MSMg01no540_l21.b1 PHD_FILE: MSMg01no540_l21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:20:07 2005
(592 letters)
>mm_chr12_99955754_99956745
Length = 992
Score = 1048 bits (542), Expect = 0.0
Identities = 583/604 (96%), Gaps = 13/604 (2%)
Strand = Plus / Plus
Query: 2 ggaattcactaagttttgttgcatgaattgtctcttcttcctgtcacccaagacactgca 61
|||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 189 ggaattcactaagtttggttgcatgaattgtctcttcttcctgtcactcaagacactgca 248
Query: 62 tacaaatagtacagtttgatcatgtagatccagttgtaggccaagaaccacggagatact 121
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 249 tacaaatagtacagtttgatcatgtagatccagttgtaggccaagaaccatggagatact 308
Query: 122 gtggagcctccgaagccagtgcctctccaagtcctgtccacaggccacccctaccagaat 181
||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 309 gtgcagcctccaaagccagtgcctctccaagtcctgtccacaggccacccctaccggaat 368
Query: 182 tacttagaatgttttgtggaccc-taaaaaaaactaagttcctaggtaaatcttatgccg 240
||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct: 369 tacttagaatgttttgtgggcccttaaaaaaaactaagttcctaggtaaatcttatgccg 428
Query: 241 ttaaaagttttaaagcactgcggcatcccacactgtccctccgacattatataggcagtt 300
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 429 ttaaaagttttaaagcactgccgcatcccacactgtccctccgacattatataggcagtt 488
Query: 301 gtgcacacaacctataatttaagtacccaggagatgtctgtaagcccagcactgctgtag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 gtgcacacaacctataatttaagtacccaggagatgtctgtaagcccagcactgctgtag 548
Query: 361 cggaagtaaaaggatcacagactggtggcaagtctgagctcctgagtgagttccaggcca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 cggaagtaaaaggatcacagactggtggcaagtctgagctcctgagtgagttccaggcca 608
Query: 421 gcctgggctacataggaagagcccccc------------cagccccctcctatgcttgaa 468
||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 609 gcctgggctacataggaagagccccccagccccagcccccagccccctcctatgcttgaa 668
Query: 469 aagctgcatggatatcacttttcctgttttgaatccatgaactttaaataagtcaaaagt 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 aagctgcatggatatcacttttcctgttttgaatccatgaactttaaataagtcaaaagt 728
Query: 529 ccagaaccattgctgttttctgtaacccacatacatcatttacgagaaagcaactaccgt 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 ccagaaccattgctgttttctgtaacccacatacatcatttacgagaaagcaactaccgt 788
Query: 589 cctg 592
||||
Sbjct: 789 cctg 792
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 592
Length of database: 992
Length adjustment: 10
Effective length of query: 582
Effective length of database: 982
Effective search space: 571524
Effective search space used: 571524
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no540_l21.g1 MSMg01no540_l21.g1 CHROMAT_FILE:
MSMg01no540_l21.g1 PHD_FILE: MSMg01no540_l21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:20:07 2005
(500 letters)
>mm_chr12_100121426_100122324
Length = 899
Score = 832 bits (430), Expect = 0.0
Identities = 478/500 (95%), Gaps = 11/500 (2%)
Strand = Plus / Minus
Query: 1 ctcagtctttgtgaaaagctaatgtttaaacatttacagtgggaagttgtggagacttac 60
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 ctcagtctttgtgaaaatctaatgtttaaacatttacagtgggaagttgtggagacttac 590
Query: 61 ataggtcttctggggtaactgttttcaattctctgcttaggtattaccatccaggggcct 120
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 589 ataggtcttctggggtaactgttttcaattctctgcttaggtattaccaaccaggggcct 530
Query: 121 ttaataccgtgagcttcacagacataccttcagtatagctattgggaatttgagatagta 180
||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| ||
Sbjct: 529 ttaataccgtgagcttcacagacatacctaaagtatagctactgggaatttgagataata 470
Query: 181 ctgatcacttgtttgcctttattttcccattatttgttctttttctggaatttcttcttt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 ctgatcacttgtttgcctttattttcccattatttgttctttttctggaatttcttcttt 410
Query: 241 tcatggtcttaagtttattgccctatacacaggaaggatggtgttcaaaaatctcacctg 300
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 409 tcatggtcttaagtttattgccctatacacaggaaggatggcgttcaaaaatctcacctg 350
Query: 301 ttgacagatttttttttcagctttatctgtgtcctacatattagccatcctagcttctaa 360
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 ttgacaga-ttttttttcagctttatctgtgtcctacatattagccatcctagcttctaa 291
Query: 361 acttcaggatcttgccagttaaacaaaaacacaaatctttatgtacctcaatgtagaaat 420
||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||
Sbjct: 290 acttcaggatcttgccagttaaacaaaaacacaaatctttatgtacccccatgaagaaat 231
Query: 421 tgtctcctaagtgaaatttagtcagctgtaaaacccactttatttcatctctcccctctt 480
|||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 230 tgtctcctaagtgaaatttagtcagctgta----------gatttcatctctcccctctt 181
Query: 481 tcataattcatattcttgtg 500
||||||||||||||||||||
Sbjct: 180 tcataattcatattcttgtg 161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 500
Length of database: 899
Length adjustment: 10
Effective length of query: 490
Effective length of database: 889
Effective search space: 435610
Effective search space used: 435610
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
