Query= MSMg01no541_k10.b1 MSMg01no541_k10.b1 CHROMAT_FILE:
MSMg01no541_k10.b1 PHD_FILE: MSMg01no541_k10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:21:23 2005
(703 letters)
>mm_chr12_100940925_100942028
Length = 1104
Score = 1307 bits (676), Expect = 0.0
Identities = 694/700 (99%), Gaps = 1/700 (0%)
Strand = Plus / Plus
Query: 5 gaattcaatagaatttaatatcggagattttatttttagagaggcaaacatgtatctcta 64
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 205 gaattcaatagaatttaatatcggagattttatttttagagaggcaagcatgtatctcta 264
Query: 65 gggttaagagaagatcatccttggagctataaatccaaccctgttacagtcggaagagaa 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gggttaagagaagatcatccttggagctataaatccaaccctgttacagtcggaagagaa 324
Query: 125 tccacaagcatgagaaatgtcctcattgaagtaatagcatgcttcatttcaggctggaaa 184
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct: 325 tccacaagcatgagaaatgtcctcattgaagtaatagcgtgcttcatttcaggttggaaa 384
Query: 185 acgtccttgctggtttctgtgggctcaatgacatagtgtgaggccccgcagacttgccac 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 acgtccttgctggtttctgtgggctcaatgacatagtgtgaggccccgcagacttgccac 444
Query: 245 ccagagaggccggaagacatgggaggctttctgttgaagccttctgaggactcctatttc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ccagagaggccggaagacatgggaggctttctgttgaagccttctgaggactcctatttc 504
Query: 305 tgaggaactcattattcatttaattattcattctgtttatttactgtatagttattacac 364
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 505 tgaggaactcattattcatttaattattcattctgcttatttactgtatagttattacac 564
Query: 365 ataaatatggtgtaactccccagaatcctcaaacaccagatgccagcttccctctgcatt 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ataaatatggtgtaactccccagaatcctcaaacaccagatgccagcttccctctgcatt 624
Query: 425 ccccaaagacagagcagagccatcgcagggagaattcaaacagctaaaacccaattaaag 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ccccaaagacagagcagagccatcgcagggagaattcaaacagctaaaacccaattaaag 684
Query: 485 ctgcggcagcatgttcatttccaaaagaaaagccctgaaaccaatcagcttgtagtcacc 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ctgcggcagcatgttcatttccaaaagaaaagccctgaaaccaatcagcttgtagtcacc 744
Query: 545 ctcctgactgcttctgcatagacaaacaaacaaacaaaattcctgaaaactaaagctgga 604
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ctcctgactgcttctgcacagacaaacaaacaaacaaaattcctgaaaactaaagctgga 804
Query: 605 actagtattggcatttgaatcgtggctctggtgaactctggc-ttaggtcaggtagactt 663
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 805 actagtattggcatttgaatcgtggctctggtgaactctggccttaggtcaggtagactt 864
Query: 664 tgtatcattgctggctaatttaatttgctatcatttcttc 703
||||||||||||||||||||||||||||||||||||||||
Sbjct: 865 tgtatcattgctggctaatttaatttgctatcatttcttc 904
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 703
Length of database: 1104
Length adjustment: 10
Effective length of query: 693
Effective length of database: 1094
Effective search space: 758142
Effective search space used: 758142
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no541_k10.g1 MSMg01no541_k10.g1 CHROMAT_FILE:
MSMg01no541_k10.g1 PHD_FILE: MSMg01no541_k10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:21:23 2005
(663 letters)
>mm_chr12_101088336_101089398
Length = 1063
Score = 1189 bits (615), Expect = 0.0
Identities = 651/663 (98%)
Strand = Plus / Minus
Query: 1 aggacaagagttccttgtgtcttgagggtctagggggaaactggatctttcaatctaata 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 863 aggacaagagttccttgtgtcttgagggtctagggggaaactggatctttcaatctaatg 804
Query: 61 attgccaggttcttccggagaaatgtctagagagcaaaagtagtcagcttcagaggtgac 120
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 actgccaggttcttccagagaaatgtctagagagcaaaagtagtcagcttcagaggtgac 744
Query: 121 tgccctagttatgttctcagtgtataaaccaagtcagactcacagagaatcagtgataag 180
||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 743 caccctagttacgttctcagtgtataaaccaagtcagactcacagagaatcagttataag 684
Query: 181 accaagtacacaaagagcaaagccaaaaccctctgagacccgatgcagcagagatagttt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 accaagtacacaaagagcaaagccaaaaccctctgagacccgatgcagcagagatagttt 624
Query: 241 accttccaacttgataagaatgacggcatgttcataattagttcagaatgccacaggaac 300
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 623 accttccaacttgataagaatgtcggcatgttcataattagttcagaatgccacaggaac 564
Query: 301 aaaataagatatttttataatactggtgaatagttggccattttgttgatgtttttagtg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 aaaataagatatttttataatactggtgaatagttggccattttgttgatgtttttagtg 504
Query: 361 gttatattacaactgaaagcaatttggttttcaatatatgtatttatttctaaaattcgt 420
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 gttatattataactgaaagcaatttggttttcaatatatgtatttatttctaaaattcgt 444
Query: 421 gttctggctgctctgtagccattgcctcttcctttactgtcttgttagtcctacagttag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 gttctggctgctctgtagccattgcctcttcctttactgtcttgttagtcctacagttag 384
Query: 481 gtgaattcaaagctcgtctctgattcatgttctatacgtttgcttctaagaatcgcaaaa 540
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 383 gtgaattcaaagctcgtctctgactcatgttctatacgtttgcttctaagaatcgcaaaa 324
Query: 541 accatgtttccaattaccttttatgtttagcagttggaacattgtacttgaataaaatta 600
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 323 accatgtttccaattaccttttatgttcagcagttggaacattgtacttgaataaaatta 264
Query: 601 tataatgagtcaatgctaaaatttcttagtcaactttcttttctatgaaattctggtttg 660
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 263 tataatgagtcaatgctaaaatttcttagtcaacttttttttctatgaaattctggtttg 204
Query: 661 ttt 663
|||
Sbjct: 203 ttt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 663
Length of database: 1063
Length adjustment: 10
Effective length of query: 653
Effective length of database: 1053
Effective search space: 687609
Effective search space used: 687609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
