Query= MSMg01no541_o10.b1 MSMg01no541_o10.b1 CHROMAT_FILE:
MSMg01no541_o10.b1 PHD_FILE: MSMg01no541_o10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:21:44 2005
(672 letters)
>mm_chr12_44643628_44644701
Length = 1074
Score = 1243 bits (643), Expect = 0.0
Identities = 661/668 (98%), Gaps = 3/668 (0%)
Strand = Plus / Minus
Query: 5 gaattcaatgaaaatgaagacacagcatacctaagcatatgggacactatagaaaagagt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 986 gaattcaatgaaaatgaagacacagcatacctaagcatatgggacactatagaaaagagt 927
Query: 65 gtaaagagaaacttcatagcattaagtgcttacataaagatattggagggaccctatact 124
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 926 gtaaagagaaaattcatagcattaagtgcttacataaagatattggagggaccctatact 867
Query: 125 gtcaacttaaaagcacacctgaaagcactacaacagaaagaagcaaacacacccaagagg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 866 gtcaacttaaaagcacacctgaaagcactacaacagaaagaagcaaacacacccaagagg 807
Query: 185 aatagatggcaagaaataattatgcatgttatgtactttctgataagtggatattagtca 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 806 aatagatggcaagaaataattatgcatgttatgtactttctgataagtggatattagtca 747
Query: 245 aaaagtacagaatacccaggaatgaagttttttttaacaagaaaaatggtctcattgata 304
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 746 aaaagtacagaatacccaggaatgaag-tttttttaacaagaaaaatggtctcattgata 688
Query: 305 tactctaatatttaaaataattagtgccaatacttttcaaatgcttctaaatattaaaga 364
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 687 tactctaatatttaaaataattagtaccaatacttttcaaatgcttctaaatattaaaga 628
Query: 365 ttgtgatacctctaaaagctcattttacagaaaacaaacaaataaaacatcccaaacatt 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 ttgtgatacctctaaaagctcattttacagaaaacaaacaaataaaacatcccaaacatt 568
Query: 425 taaaaaatactca--tttttttctaggtaagcattattctacaatacaagaaacaaaaaa 482
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 taaaaaatactcatttttttttctaggtaagcattattctacaatacaagaaacaaaaaa 508
Query: 483 taatgcctcagtatcattcctgaacaatagttgtgctagggatatttagaacagagaagg 542
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 taatgcctcagtatcattcgtgaacaatagttgtgctagggatatttagaacagagaagg 448
Query: 543 aagtattcagagctcagcccaagctgtgtgtttacacactttgggtacagctttcattac 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 aagtattcagagctcagcccaagctgtgtgtttacacactttgggtacagctttcattac 388
Query: 603 attccaccctctgagaaaatgaaagtgacagttanatatatgtgtgtgtgtgtgtgtgtg 662
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 387 attccaccctctgagaaaatgaaagtgacagttagatatatgtgtgtgtgtgtgtgtgtg 328
Query: 663 tgtgtgtg 670
||||||||
Sbjct: 327 tgtgtgtg 320
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 43
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 672
Length of database: 1074
Length adjustment: 10
Effective length of query: 662
Effective length of database: 1064
Effective search space: 704368
Effective search space used: 704368
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no541_o10.g1 MSMg01no541_o10.g1 CHROMAT_FILE:
MSMg01no541_o10.g1 PHD_FILE: MSMg01no541_o10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:21:44 2005
(670 letters)
>mm_chr12_44468130_44469199
Length = 1070
Score = 1197 bits (619), Expect = 0.0
Identities = 658/671 (98%), Gaps = 1/671 (0%)
Strand = Plus / Plus
Query: 1 tctcttctttccacataaaataaaatcgttagtt-tctttactgttcttttttcataagc 59
|||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 200 tctcctctttccacataaaataaaatcgttagtaatctttactgttcttttttcataagc 259
Query: 60 cattgggtaaaattttgctcattatttttaaaaattctgaaagtacagaatacactaatg 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 cattgggtaaaattttgctcattatttttaaaaattctgaaagtacagaatacactaatg 319
Query: 120 aagtaataacaaggatgctataactcttcgtgtgattctgtcattataaaaatataattt 179
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 320 aagtaataacaaggatgctataacacttcgtgtgattctgtcattataaaaatataattt 379
Query: 180 aaacaaaacaaattctcacatataagctgtattggaaataaaagaaatcccaattggtcc 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 aaacaaaacaaattctcacatataagctgtattggaaataaaagaaatcccaattggtcc 439
Query: 240 aaactggagctcaatgtgcaggttctcaatgtgcattattagtttatttatgtgaaattc 299
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 440 aaactggagctcaatgtgcaggttctcaatgtgcagtattagtttatttatgtgaaattc 499
Query: 300 cataaaatgaaaacctttatatagcaagggtaatatactatgtgggcacattaaaaggat 359
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct: 500 cataaaatgaaaacctttatacagcaaaggtaatatactatgtgggcacattaaaaggat 559
Query: 360 gtttcacagcttggtaataaaacttttcagtataaaatacaaggtgtgtttaattatgct 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gtttcacagcttggtaataaaacttttcagtataaaatacaaggtgtgtttaattatgct 619
Query: 420 aataaatataaaatcctttacatataaacaattttaaatacttgtaaaagtactgaccaa 479
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 620 aataaatataaaatcctttacatataaacaattttaaatacttgtaaaagtactgatcaa 679
Query: 480 aaattttgacaccattccaacagtagaatttcaatatttttcttctggtcaggaacacaa 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 680 aaattttgacaccattccaacagtagaatttcaatatttttcttctggtcaggaaaacaa 739
Query: 540 aagttttaactatgtttttgggatcaaacattaacccaataagtcaatgaagctcagatt 599
|||||||||||||| ||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 740 aagttttaactatgatttcgagatcaaacattaacccaataagtcaatgaagctcagatt 799
Query: 600 gggccctaataataatgtgaattaaatgctgtgatttcttctaccagacacaacagaaaa 659
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 800 gggccctaataataatgtgaattaaatgctgtgatttcttccaccagacacaacagaaaa 859
Query: 660 tgaaacctaag 670
|||||||||||
Sbjct: 860 tgaaacctaag 870
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 670
Length of database: 1070
Length adjustment: 10
Effective length of query: 660
Effective length of database: 1060
Effective search space: 699600
Effective search space used: 699600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
