Query= MSMg01no542_f10.b1 MSMg01no542_f10.b1 CHROMAT_FILE:
MSMg01no542_f10.b1 PHD_FILE: MSMg01no542_f10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:22:20 2005
(648 letters)
>mm_chr12_93146919_93147969
Length = 1051
Score = 1218 bits (630), Expect = 0.0
Identities = 640/644 (99%), Gaps = 3/644 (0%)
Strand = Plus / Plus
Query: 6 gaattccaccatgccttccccaccaccatggactgtgagcccttcaaccatgatccaaaa 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattccaccatgccttccccaccaccatggactgtgagcccttcaaccatgatccaaaa 265
Query: 66 taaatttcttctccctttatttacatttattaggtcacaatgaccaattcagtcttctac 125
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 266 taaatttcttctccctttatttacatttattaggttacaatgaccaattcagtcttctac 325
Query: 126 tcagatctactgctattggaaaataacaagaggcctcttgcaccacctcctactgcattt 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 tcagatctactgctattggaaaataacaagaggcctcttgcaccacctcctactgcattt 385
Query: 186 gtgacat--tgg-tatttctgtatggctgaatggctggtattatgaaggctaagaagctg 242
||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 gtgacatgctgggtatttctgtatggctgaatggctggtattatgaaggctaagaagctg 445
Query: 243 atttttgttcctcttgggtagagagctcctttggaggcccatcgagctaactcgcagacc 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 atttttgttcctcttgggtagagagctcctttggaggcccatcgagctaactcgcagacc 505
Query: 303 aaaggagaaccagagctatttactgcagctgtgttcactcagcccgctgctgagagaatt 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 aaaggagaaccagagctatttactgcagctgtgttcactcagcccgctgctgagagaatt 565
Query: 363 tgacatgttcccctgtttaaccttccagaagtgtcctcaccttcaatttctacctgggtc 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 tgacatgttcccctgtttaaccttccagaagtgtcctcaccttcaatttctacctgggtc 625
Query: 423 ttgaaaaacgtttcatttggatctctgtgcagggctgttttcccagtgggctcaggccac 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 ttgaaaaacgtttcatttggatctctgtgcagggctgttttcccagtgggctcaggccac 685
Query: 483 atctctcattagtcccccttgctgatcttcacagtaaagggcgtgcccactaaggtctct 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 atctctcattagtcccccttgctgatcttcacagtaaagggcgtgcccactaaggtctct 745
Query: 543 gggtaaagactgttcagggctcagagctctaaaggggcaggtttggctccacaggataaa 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 gggtaaagactgttcagggctcagagctctaaaggggcaggtttggctccacaggataaa 805
Query: 603 ttgttccttgacctcaatttttacaccctgtaactgtgggctga 646
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 806 ttgttccttgacctcaatttttacaccctgtaactgtgggctga 849
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 648
Length of database: 1051
Length adjustment: 10
Effective length of query: 638
Effective length of database: 1041
Effective search space: 664158
Effective search space used: 664158
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no542_f10.g1 MSMg01no542_f10.g1 CHROMAT_FILE:
MSMg01no542_f10.g1 PHD_FILE: MSMg01no542_f10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:22:20 2005
(588 letters)
>mm_chr12_93290317_93291303
Length = 987
Score = 1122 bits (580), Expect = 0.0
Identities = 586/588 (99%), Gaps = 1/588 (0%)
Strand = Plus / Minus
Query: 1 cataaactcaagagcaactaagaaaaatctatcattttatgtttatcatcattgtaaatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 787 cataaactcaagagcaactaagaaaaatctatcattttatgtttatcatcattgtaaatt 728
Query: 61 tcaaacagaagggtctggtataatgagaaataggaactagagggttgactagatattctt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 tcaaacagaagggtctggtataatgagaaataggaactagagggttgactagatattctt 668
Query: 121 caaaggcagtaatgtcttaggaaagatttcaaaagcaatagaatgatctaccatccacca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 caaaggcagtaatgtcttaggaaagatttcaaaagcaatagaatgatctaccatccacca 608
Query: 181 agaaaaataacattgccttcactatggccccactaagacaaagcacacatgatgttctct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 agaaaaataacattgccttcactatggccccactaagacaaagcacacatgatgttctct 548
Query: 241 atctaagagtacgctaaacaatctacaggtagtttgggctgtagctgaagcatacagaga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 atctaagagtacgctaaacaatctacaggtagtttgggctgtagctgaagcatacagaga 488
Query: 301 ttaaagctggagccagtaaaagaggaaacatggaaacgcagagcagataatctaaacaga 360
||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 487 ttaaagctggagccagt-aaataggaaacatggaaacgcagagcagataatctaaacaga 429
Query: 361 taatgatggaaagcatttctgggttttgcccaatacataatgcttgctcccaaaccaagg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 taatgatggaaagcatttctgggttttgcccaatacataatgcttgctcccaaaccaagg 369
Query: 421 ggctttcacaaaacaaacatctttctttttaatgtctccaaactttgtgtaggtcttgtt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggctttcacaaaacaaacatctttctttttaatgtctccaaactttgtgtaggtcttgtt 309
Query: 481 gcctagacataggaggagaatggagttgacagacttgggtcacgttaggattttcaacaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gcctagacataggaggagaatggagttgacagacttgggtcacgttaggattttcaacaa 249
Query: 541 aactataatgttaatcatgcagcatttgccaaagacaaatttctctga 588
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 aactataatgttaatcatgcagcatttgccaaagacaaatttctctga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 588
Length of database: 987
Length adjustment: 10
Effective length of query: 578
Effective length of database: 977
Effective search space: 564706
Effective search space used: 564706
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
