NAATTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCAGCAGAGCTTACTTGTTCTCCTTGGTGGGTGGTATCAACAGGC
CACATTTGAAACCCATGCTTCTCTTGATAGGCGTTTGAGTTGTTTCAAAC
TGGGAATTATAATGCATAATGTTGCCACAGATATTCTTAAATACATCTTT
TGGCAAATACGTCTACATTTTTTTCTGAGCATAAAATAAAATTGCTGTTC
AGACAGACCTCACAGAGACACTGCCAAGTGGTCTTCCAAGGGAGTTGCAA
CAGTTTACACTCCATCAGGAGCTCTCTGAGTTTCCTTGAGAATCTCTGCG
CTAGGCTGGTGGGTGTACGCTGCTGTCTTGCTTAGTTCTTGATTTTTATA
TTTCACTAACATGACAGAAGCACTCTCTGAAAGTTTATGATTACTCGGAT
GTTTTCTTTAGGCAATGTTTCCTCACATGTTTTCTTAGTGTTTTCTACAT
GGTTTCATTCGTTCCCTCACTGGTTCTCAGAAAATCTTTGTATATTCTCA
ATGCTATGAATAAAAAAAAAATGTACTGGAAATAGATGCTCTGATTCTGG
GCCTTGTATTTTTGTTCTTAAACTTAATATAGTCCAAATTATCACCCTTA
CTCTGGGGTGTGTTTCTTGCATGCTGTTAAAATTATGAAGTATTCTTGTG
ACTTTTCGCCTAGGAACCTTACTGGTTTCCTTCTACATTTAACTAGAATT
TGTCTGTATAGTN

NNCCAATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCTCTTGGAGGATTTTACCTTTG
ATGAGTATGAAGTGTCCCTCCTTGTCTTTTTTGATAACTTTTGGTTGGAA
GTCGACTTTATTCGATATTAGAATGGCTACTCCAGCTTGATTCTTCAGAC
CACTTGCTTCCAAAATTGTTTTCCAGCCTTTCACTCTGAGGTAGTGTCTG
TCTTTTTCCCTGAGATGGGATTCCTGTAAGCAGTAAAATGTTGGGTCCTG
TTTGTGTAGCCAGTCTGTTAGCCTATGTCTTTTTATTGGGGAATTGAGTC
CATTGATATTAAGAGATATTAAGGAAAAAGTAACTGTTGCTTCCTATTAT
TTTTGTTGTTCGAGTTGGCATTCTGTTCTTGTTGCTGTGTTCTTTTTGGT
TTGTTGAAGGATTACTTTCTTGTTTTTTCTAGAATGTGGTTTCTGTCCTT
GTATTGGTGTTTTTCTGTTATTATCCTCTGAAGGGCTGTATTCGTGGAAA
GAAAATATGATAATTTGGTTTTGTCGTGGAATACTTTGGTTTCTCCATCT
ATGGTAATTGAAAGTTTGGCTGGGTATAGTAGCCTGGGCTGGCATTTTTG
TTTTCTTAGTGTCTGTATAACGTCTTTCCAGGATCTTCTGGCTTTCATAG
TCTCTGGTGAATAGTCTGGTGTAATTCTTATAGGCCTGCCTTTATATGAT
ACTTGATCTTTN

Query= MSMg01no542_l18.b1 MSMg01no542_l18.b1 CHROMAT_FILE:
MSMg01no542_l18.b1 PHD_FILE: MSMg01no542_l18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:22:52 2005
         (662 letters)



>mm_chr12_44923893_44924951
          Length = 1059

 Score = 1214 bits (628), Expect = 0.0
 Identities = 650/658 (98%), Gaps = 4/658 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagcagagcttacttgttctccttggtgggtggtatcaacaggccacatttgaaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattcagcagagcttacttgttctccttggtgggtggtatcaacaggccacatttgaaa 265

                                                                       
Query: 65  cccatgcttctcttgataggcgtttgagttgtttcaaactgggaattataatgcataatg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 cccatgcttctcttgataggcgtttgagttgtttcaaactgggaattataatgcataatg 325

                                                                       
Query: 125 ttgccacagatattcttaaatacatcttttggcaaatacgtctacatttttttctgagca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 ttgccacagatattcttaaatacatcttttggcaaatacgtctacatttttttctgagca 385

                                                                       
Query: 185 taaaataaaattgctgttcagacagacctcacagagacactgccaagtggtcttccaagg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 taaaataaaattgctgttcagacagacctcacagagacactgccaagtggtcttccaagg 445

                                                                       
Query: 245 gagttgcaacagtttacactccatcaggagctctctgagtttccttgagaatctctgcgc 304
            |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 446 -agttgcaacagtttacactccatcaggagctctctgagtttcctcgagaatctctgcgc 504

                                                                       
Query: 305 taggctggtgggtgtacgctgctgtcttgcttagttcttgatttttatatttcactaaca 364
           ||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 505 taggctggtgggtgtgcgctgctgtcttgtttagttcttgatttttatatttcactaaca 564

                                                                       
Query: 365 tgacagaagcactctctgaaagtttatgattactcggatgttttctttaggcaatgtttc 424
           |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tgacagaagcactct--gaaagtttatgattactcggatgttttctttaggcaatgtttc 622

                                                                       
Query: 425 ctcacatgttttcttagtgttttctacatggtttcattcgttccctcactggttctcaga 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 ctcacatgttttcttagtgttttctacatggtttcattcgttccctcactggttctcaga 682

                                                                       
Query: 485 aaatctttgtatattctcaatgctatgaataaaaaaaaaatgtactggaaatagatgctc 544
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 683 aaatctttgtatattctcaatgctatgaataaaaaaaaa-tgtactggaaatagatgctc 741

                                                                       
Query: 545 tgattctgggccttgtatttttgttcttaaacttaatatagtccaaattatcacccttac 604
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 742 tgattctgggccttgtatttttattcttaaacttaatatagtccaaattatcacccttac 801

                                                                     
Query: 605 tctggggtgtgtttcttgcatgctgttaaaattatgaagtattcttgtgacttttcgc 662
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 tctggggtgtgtttcttgcatgctgttaaaattatgaagtattcttgtgacttttcgc 859


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 662
Length of database: 1059
Length adjustment: 10
Effective length of query: 652
Effective length of database: 1049
Effective search space:   683948
Effective search space used:   683948
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)